JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA5L1_chr15_45397336_45426415	0/0	c0017	2262	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5L1_chr15_45397336_45426415	0/0	c0018	2262	1	1	0	0	0	0	copy fasta	SPATA5L1	chr15	45397336	45426415
SPATA5_chr4_122918078_123324433	1/1	c0001	2682	212	44	38	92	11	25	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0002	2682	19	18	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0003	2682	10	3	1	1	0	5	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0004	2682	8	7	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0005	2682	4	0	1	0	3	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0006	2682	2	0	1	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0007	2682	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0008	2682	2	2	0	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0009	2682	1	0	1	0	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0010	2682	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA5_chr4_122918078_123324433	0/0	c0011	2682	1	0	0	1	0	0	copy fasta	SPATA5	chr4	122918078	123324433
SPATA6L_chr9_4593316_4671480	1/1	c0001	1179	254	69	52	93	7	31	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0002	1179	86	0	11	73	0	2	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0003	1179	17	4	8	2	1	2	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0004	1179	15	2	2	11	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0005	1179	9	9	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0006	1179	8	6	2	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0007	1179	3	0	0	3	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0008	1179	2	0	0	2	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0009	1179	2	2	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0010	1179	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0011	1101	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0012	1179	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0013	1179	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0014	1179	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0015	1179	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0016	1179	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0017	1179	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0018	1179	1	0	0	0	0	1	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0019	1179	1	1	0	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0020	1179	1	0	0	1	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6L_chr9_4593316_4671480	0/0	c0021	1179	1	0	1	0	0	0	copy fasta	SPATA6L	chr9	4593316	4671480
SPATA6_chr1_48290373_48477204	1/0	c0001	1467	222	66	35	96	9	15	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/1	c0002	1467	93	2	21	51	7	11	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	c0003	1467	3	0	3	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	c0004	1467	2	0	2	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	c0005	1467	1	0	1	0	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA6_chr1_48290373_48477204	0/0	c0006	1467	1	0	0	1	0	0	copy fasta	SPATA6	chr1	48290373	48477204
SPATA7_chr14_88380657_88443460	1/0	c0001	1800	170	35	20	100	6	8	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0002	1800	130	27	23	57	6	17	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/1	c0003	1800	30	3	12	5	2	7	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0004	1800	14	13	1	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0005	1800	5	5	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0006	1800	4	4	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0007	1800	3	0	0	3	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0008	1800	2	2	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0009	1800	1	1	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0010	1800	1	0	0	1	0	0	copy fasta	SPATA7	chr14	88380657	88443460