JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATA7_chr14_88380657_88443460	0/0	c0011	1800	1	1	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0012	1800	1	0	0	1	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0013	1800	1	1	0	0	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA7_chr14_88380657_88443460	0/0	c0014	1800	1	0	0	1	0	0	copy fasta	SPATA7	chr14	88380657	88443460
SPATA9_chr5_95653315_95687991	1/1	c0001	765	313	81	55	124	14	37	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	c0002	765	46	2	10	22	4	8	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	c0003	765	15	9	6	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	c0004	765	3	0	0	3	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	c0005	765	2	0	0	1	0	1	copy fasta	SPATA9	chr5	95653315	95687991
SPATA9_chr5_95653315_95687991	0/0	c0006	765	1	0	1	0	0	0	copy fasta	SPATA9	chr5	95653315	95687991
SPATC1L_chr21_46156160_46189459	0/0	c0001	1023	171	25	52	56	13	25	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0002	1023	21	20	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0003	1023	16	8	2	0	1	5	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/1	c0004	1023	11	1	6	2	0	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0005	1023	9	4	2	0	1	2	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0006	1023	8	7	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0007	1023	3	2	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0008	1023	3	3	0	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0009	1023	1	0	0	0	1	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0010	1023	1	0	0	0	0	1	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0011	1023	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0012	1023	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0013	1023	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0014	1023	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0015	1023	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0016	1023	1	0	0	1	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATC1L_chr21_46156160_46189459	0/0	c0017	1023	1	0	1	0	0	0	copy fasta	SPATC1L	chr21	46156160	46189459
SPATS1_chr6_44337650_44385179	0/1	c0001	903	180	45	28	78	8	20	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0002	903	90	3	27	56	2	2	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0003	903	77	8	10	42	4	13	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	1/0	c0004	903	30	27	1	0	0	1	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0005	903	4	0	0	4	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0006	903	4	4	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0007	903	4	4	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0008	903	2	2	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS1_chr6_44337650_44385179	0/0	c0009	903	1	1	0	0	0	0	copy fasta	SPATS1	chr6	44337650	44385179
SPATS2L_chr2_200301693_200487264	1/0	c0001	1677	231	39	44	105	6	36	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/1	c0002	1677	28	20	0	6	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0003	1677	18	0	3	15	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0004	1677	11	11	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0005	1677	3	0	0	3	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0006	1677	2	1	1	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0007	1677	1	0	0	1	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0008	1677	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0009	1677	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0010	1677	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0011	1677	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0012	1677	1	0	0	0	0	1	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2L_chr2_200301693_200487264	0/0	c0013	1677	1	1	0	0	0	0	copy fasta	SPATS2L	chr2	200301693	200487264
SPATS2_chr12_49362462_49532425	1/1	c0001	1638	153	80	28	18	7	18	copy fasta	SPATS2	chr12	49362462	49532425