JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPATS2_chr12_49362462_49532425	0/0	c0002	1638	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	c0003	1638	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	c0004	1638	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	c0005	1638	1	1	0	0	0	0	copy fasta	SPATS2	chr12	49362462	49532425
SPATS2_chr12_49362462_49532425	0/0	c0006	1638	1	0	0	0	1	0	copy fasta	SPATS2	chr12	49362462	49532425
SPC24_chr19_11140493_11160782	1/1	c0001	594	430	96	80	194	16	42	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	c0002	594	3	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	c0003	594	3	0	0	3	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC24_chr19_11140493_11160782	0/0	c0004	594	2	0	0	2	0	0	copy fasta	SPC24	chr19	11140493	11160782
SPC25_chr2_168865891_168895430	0/0	c0001	675	351	92	64	148	16	31	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	c0002	675	5	4	0	0	0	1	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	c0003	675	3	0	0	3	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPC25_chr2_168865891_168895430	0/0	c0004	675	1	0	0	1	0	0	copy fasta	SPC25	chr2	168865891	168895430
SPCS1_chr3_52701106_52716148	1/1	c0001	309	406	92	76	178	16	42	copy fasta	SPCS1	chr3	52701106	52716148
SPCS1_chr3_52701106_52716148	0/0	c0002	309	4	0	0	4	0	0	copy fasta	SPCS1	chr3	52701106	52716148
SPCS2_chr11_74944266_74984033	1/1	c0001	681	367	87	60	158	18	42	copy fasta	SPCS2	chr11	74944266	74984033
SPCS2_chr11_74944266_74984033	0/0	c0002	681	11	11	0	0	0	0	copy fasta	SPCS2	chr11	74944266	74984033
SPCS3_chr4_176314966_176337245	1/1	c0001	543	448	92	74	220	15	45	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	c0002	543	20	8	6	0	3	3	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	c0003	543	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPCS3_chr4_176314966_176337245	0/0	c0004	543	1	0	0	1	0	0	copy fasta	SPCS3	chr4	176314966	176337245
SPDEF_chr6_34532802_34561329	1/1	c0001	1008	302	58	56	135	13	38	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0002	1008	40	10	9	20	0	1	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0003	1008	26	18	3	4	1	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0004	1008	5	5	0	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0005	1008	3	2	1	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0006	1008	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0007	1008	1	0	1	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0008	1008	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0009	1008	1	1	0	0	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0010	1008	1	0	0	0	0	1	copy fasta	SPDEF	chr6	34532802	34561329
SPDEF_chr6_34532802_34561329	0/0	c0011	1008	1	0	0	1	0	0	copy fasta	SPDEF	chr6	34532802	34561329
SPDL1_chr5_169578773_169609778	0/1	c0001	1818	238	50	42	110	9	26	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	1/0	c0002	1818	139	26	29	67	4	12	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0003	1818	4	4	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0004	1818	2	2	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0005	1818	2	1	1	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0006	1818	2	2	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0007	1818	2	1	1	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0008	1818	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0009	1818	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0010	1818	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0011	1818	1	0	0	0	1	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0012	1818	1	0	1	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0013	1818	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0014	1818	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0015	1818	1	0	0	1	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDL1_chr5_169578773_169609778	0/0	c0016	1818	1	1	0	0	0	0	copy fasta	SPDL1	chr5	169578773	169609778
SPDYA_chr2_28805834_28855610	1/1	c0001	942	325	69	62	136	18	38	copy fasta	SPDYA	chr2	28805834	28855610
SPDYA_chr2_28805834_28855610	0/0	c0002	942	5	5	0	0	0	0	copy fasta	SPDYA	chr2	28805834	28855610