JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPDYE16_chr7_76526313_76548297	0/0	c0013	1059	1	0	0	1	0	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE16_chr7_76526313_76548297	0/0	c0014	1059	1	0	0	0	1	0	copy fasta	SPDYE16	chr7	76526313	76548297
SPDYE17_chr7_77017306_77037361	0/0	c0001	798	132	50	21	43	7	11	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0002	798	85	3	18	50	5	9	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	1/0	c0003	798	58	8	18	14	3	14	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0004	798	6	6	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0005	798	4	4	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0006	798	2	0	1	0	1	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0007	798	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0008	798	1	0	1	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0009	798	1	0	0	0	0	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0010	798	1	0	1	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0011	798	1	1	0	0	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0012	798	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0013	798	1	0	0	1	0	0	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE17_chr7_77017306_77037361	0/0	c0014	798	1	0	0	0	0	1	copy fasta	SPDYE17	chr7	77017306	77037361
SPDYE18_chr7_77045391_77067558	1/0	c0001	1059	370	81	72	156	16	44	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/1	c0002	1059	28	0	2	24	0	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0003	1059	6	6	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0004	1059	4	0	0	4	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0005	1059	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0006	1059	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0007	1059	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0008	1059	1	0	1	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0009	1059	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0010	1059	1	0	0	0	0	1	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0011	1059	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE18_chr7_77045391_77067558	0/0	c0012	1059	1	1	0	0	0	0	copy fasta	SPDYE18	chr7	77045391	77067558
SPDYE1_chr7_43992897_44015124	1/0	c0001	1131	192	43	39	81	11	17	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0002	1131	140	40	21	59	2	18	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/1	c0003	1131	36	5	10	17	1	2	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0004	1131	4	0	0	4	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0005	1131	4	4	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0006	1131	3	0	0	0	0	3	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0007	1131	2	2	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0008	1131	2	2	0	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0009	1131	2	0	0	2	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0010	1131	2	0	2	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0011	1131	1	0	0	0	1	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0012	1131	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0013	1056	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0014	1131	1	0	0	1	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0015	1131	1	0	0	0	1	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0016	912	1	0	1	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE1_chr7_43992897_44015124	0/0	c0017	1131	1	0	1	0	0	0	copy fasta	SPDYE1	chr7	43992897	44015124
SPDYE21_chr7_67271941_67294005	1/0	c0001	1209	136	59	16	31	11	18	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0002	1216	119	2	22	86	0	9	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/1	c0003	1209	103	4	18	68	4	8	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0004	1209	34	0	7	21	0	6	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0005	1209	18	8	4	0	2	4	copy fasta	SPDYE21	chr7	67271941	67294005