JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPDYE21_chr7_67271941_67294005	0/0	c0006	1209	10	7	3	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0007	1209	7	0	5	0	1	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0008	1209	7	7	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0009	1209	6	6	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0010	1141	6	0	0	6	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0011	1213	3	0	3	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0012	1209	2	2	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0013	1209	2	2	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0014	1216	1	0	0	1	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0015	1216	1	0	1	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0016	1209	1	0	0	0	0	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0017	1209	1	0	1	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0018	1209	1	1	0	0	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0019	1216	1	0	0	0	0	1	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE21_chr7_67271941_67294005	0/0	c0020	1209	1	0	0	1	0	0	copy fasta	SPDYE21	chr7	67271941	67294005
SPDYE2B_chr7_102645319_102667625	0/0	c0001	1209	41	9	14	12	3	3	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0002	1209	25	3	1	15	2	4	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0003	1209	14	0	3	7	0	4	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0004	1209	11	7	1	0	1	2	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0005	1209	10	2	3	5	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0006	1209	4	0	3	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0007	1209	3	0	1	2	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0008	1209	3	3	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0009	1209	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0010	1209	2	2	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0011	1209	2	0	1	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0012	1209	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0013	1209	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0014	1209	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0015	1209	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0016	1209	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0017	1209	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0018	1209	1	0	1	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0019	1209	1	1	0	0	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0020	1209	1	0	0	0	0	1	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0021	1209	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2B_chr7_102645319_102667625	0/0	c0022	1209	1	0	0	1	0	0	copy fasta	SPDYE2B	chr7	102645319	102667625
SPDYE2_chr7_102546226_102568538	0/0	c0001	1209	64	9	14	24	6	11	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0002	1209	22	2	0	17	1	2	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0003	1209	20	3	4	8	1	4	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0004	1209	8	2	2	3	1	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0005	1209	6	1	2	2	1	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0006	1209	4	3	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0007	1209	3	0	0	3	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0008	1209	3	0	3	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0009	1209	3	3	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0010	1209	3	0	0	2	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0011	1209	3	1	1	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0012	1209	2	0	0	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0013	1209	2	0	0	1	0	1	copy fasta	SPDYE2	chr7	102546226	102568538