JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPDYE2_chr7_102546226_102568538	0/0	c0014	1209	2	0	2	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0015	1209	2	0	0	2	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0016	1209	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0017	1209	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0018	1209	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0019	1209	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0020	1209	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0021	1209	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0022	1209	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0023	1209	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0024	1209	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0025	1209	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0026	1209	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0027	1209	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0028	1209	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0029	1209	1	1	0	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0030	1209	1	0	0	0	0	1	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0031	1209	1	0	0	1	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE2_chr7_102546226_102568538	0/0	c0032	1209	1	0	1	0	0	0	copy fasta	SPDYE2	chr7	102546226	102568538
SPDYE3_chr7_100302702_100327196	1/0	c0001	1650	190	34	35	86	8	26	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/1	c0002	1650	61	5	9	35	3	8	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0003	1650	20	16	1	2	0	1	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0004	1431	18	0	4	5	4	5	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0005	1431	11	7	4	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0006	1431	10	9	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0007	1650	8	8	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0008	1431	5	1	3	0	1	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0009	1650	3	0	0	3	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0010	1650	2	0	0	2	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0011	1212	2	0	1	0	0	1	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0012	1212	2	2	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0013	1650	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0014	1650	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0015	4427	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0016	993	1	0	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0017	1650	1	0	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0018	1650	1	0	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0019	1431	1	0	0	0	0	1	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0020	1650	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0021	1431	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0022	1431	1	0	0	1	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0023	1212	1	0	1	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE3_chr7_100302702_100327196	0/0	c0024	1650	1	1	0	0	0	0	copy fasta	SPDYE3	chr7	100302702	100327196
SPDYE4_chr17_8745853_8763546	1/0	c0001	714	384	80	70	181	14	38	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0002	714	14	11	3	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0003	714	5	0	0	5	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/1	c0004	714	5	0	2	0	2	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0005	714	4	4	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0006	714	2	2	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0007	714	1	0	0	1	0	0	copy fasta	SPDYE4	chr17	8745853	8763546