JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPDYE4_chr17_8745853_8763546	0/0	c0008	714	1	1	0	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0009	714	1	0	1	0	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE4_chr17_8745853_8763546	0/0	c0010	714	1	0	0	1	0	0	copy fasta	SPDYE4	chr17	8745853	8763546
SPDYE5_chr7_75487320_75509316	0/1	c0001	1209	151	7	37	76	8	22	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0002	1209	77	34	6	37	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0003	1209	48	32	8	0	1	7	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	1/0	c0004	1209	31	6	8	9	0	7	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0005	1209	25	0	7	18	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0006	1209	24	3	11	1	6	3	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0007	1209	15	2	5	3	2	3	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0008	1209	9	0	0	9	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0009	1209	4	4	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0010	1209	4	0	0	4	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0011	1209	3	3	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0012	1209	2	0	0	2	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0013	1209	2	0	0	2	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0014	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0015	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0016	1209	1	0	1	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0017	1209	1	0	1	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0018	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0019	1209	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0020	1209	1	0	0	0	1	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0021	1209	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0022	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0023	1209	1	1	0	0	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0024	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0025	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE5_chr7_75487320_75509316	0/0	c0026	1209	1	0	0	1	0	0	copy fasta	SPDYE5	chr7	75487320	75509316
SPDYE6_chr7_102340746_102361444	0/0	c0001	1209	149	11	28	83	9	18	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0002	1209	98	17	24	44	3	10	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	1/0	c0003	1209	74	0	10	51	3	9	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0004	1209	21	19	1	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0005	1209	18	16	2	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0006	1209	18	8	6	0	2	2	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0007	1209	8	7	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0008	1209	6	0	0	5	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0009	1209	5	0	0	5	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0010	1209	4	0	3	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0011	1209	4	4	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0012	1209	3	3	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0013	1209	2	2	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0014	1209	2	2	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0015	1209	2	0	0	0	0	2	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0016	1209	2	1	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0017	1209	2	0	0	2	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0018	1209	2	0	0	2	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0019	1209	2	0	2	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0020	1209	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0021	1209	1	0	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444