JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPDYE6_chr7_102340746_102361444	0/0	c0022	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0023	1209	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0024	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0025	1209	1	1	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0026	1230	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0027	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0028	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0029	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0030	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0031	1209	1	0	0	0	1	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0032	1209	1	0	0	0	0	1	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0033	1209	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0034	1209	1	1	0	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0035	1209	1	0	1	0	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE6_chr7_102340746_102361444	0/0	c0036	1209	1	0	0	1	0	0	copy fasta	SPDYE6	chr7	102340746	102361444
SPDYE8_chr7_73014719_73034766	0/0	c0001	798	119	29	21	47	8	14	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	c0002	798	18	7	3	4	0	4	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE8_chr7_73014719_73034766	0/0	c0003	798	1	0	0	1	0	0	copy fasta	SPDYE8	chr7	73014719	73034766
SPDYE9_chr7_73070972_73091038	0/0	c0001	798	75	10	17	38	5	5	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0002	798	64	7	14	34	1	8	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0003	798	11	0	0	10	0	1	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0004	798	6	5	1	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0005	798	2	0	0	2	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0006	798	2	0	0	2	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0007	798	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0008	798	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0009	798	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPDYE9_chr7_73070972_73091038	0/0	c0010	304	1	1	0	0	0	0	copy fasta	SPDYE9	chr7	73070972	73091038
SPECC1L_chr22_24265831_24422738	0/0	c0001	3354	242	64	36	113	7	22	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0002	3354	64	6	13	35	3	7	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0003	3354	7	0	0	7	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0004	3354	2	2	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0005	3354	2	0	0	2	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0006	3354	1	0	0	0	0	1	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0007	3354	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0008	3354	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	1/0	c0009	3354	1	0	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0010	3354	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0011	3354	1	0	0	1	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0012	3354	1	1	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/0	c0013	3354	1	0	1	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1L_chr22_24265831_24422738	0/1	c0014	3354	1	0	0	0	0	0	copy fasta	SPECC1L	chr22	24265831	24422738
SPECC1_chr17_20004359_20324026	0/0	c0001	3207	85	19	21	30	4	11	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	1/1	c0002	3207	46	5	18	3	7	11	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0003	3207	37	34	3	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0004	3207	29	7	7	12	2	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0005	3204	20	0	0	20	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0006	3207	9	9	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0007	3207	8	0	6	0	1	1	copy fasta	SPECC1	chr17	20004359	20324026
SPECC1_chr17_20004359_20324026	0/0	c0008	3207	4	4	0	0	0	0	copy fasta	SPECC1	chr17	20004359	20324026