JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPEF2_chr5_35612863_35819611	0/0	c0039	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0040	5469	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0041	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0042	5469	1	0	0	0	0	1	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0043	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0044	5469	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0045	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0046	5469	1	0	0	0	1	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0047	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0048	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0049	5469	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0050	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0051	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0052	5469	1	0	0	1	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0053	5469	1	0	1	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEF2_chr5_35612863_35819611	0/0	c0054	5469	1	1	0	0	0	0	copy fasta	SPEF2	chr5	35612863	35819611
SPEGNB_chr2_219491131_219503287	0/0	c0001	717	167	17	42	80	9	19	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0002	717	123	32	23	41	3	24	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/1	c0003	718	30	2	6	19	2	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	1/0	c0004	717	28	26	1	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0005	717	10	10	0	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0006	717	6	5	1	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0007	717	6	6	0	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0008	717	2	2	0	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0009	717	1	0	0	1	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0010	717	1	0	0	0	0	1	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0011	717	1	0	1	0	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEGNB_chr2_219491131_219503287	0/0	c0012	717	1	0	0	1	0	0	copy fasta	SPEGNB	chr2	219491131	219503287
SPEG_chr2_219429843_219498629	0/0	c0001	9804	62	1	20	32	6	3	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0002	9804	39	17	3	12	0	7	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0003	9804	31	6	7	11	1	6	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0004	9804	23	1	4	7	0	11	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0005	9804	15	0	8	4	0	3	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0006	9804	12	12	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/1	c0007	9804	9	0	4	3	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0008	9804	8	5	2	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0009	9804	6	0	2	4	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	1/0	c0010	9804	6	5	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0011	9804	4	0	1	1	2	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0012	9804	4	0	0	4	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0013	9804	4	4	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0014	9804	3	3	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0015	9804	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0016	9804	2	0	0	2	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0017	9804	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0018	9804	2	0	0	2	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0019	9804	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0020	9804	2	2	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0021	9804	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0022	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629