JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	SAS	cseq	genename	chr	start	end
SPEG_chr2_219429843_219498629	0/0	c0023	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0024	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0025	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0026	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0027	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0028	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0029	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0030	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0031	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0032	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0033	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0034	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0035	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0036	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0037	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0038	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0039	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0040	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0041	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0042	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0043	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0044	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0045	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0046	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0047	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0048	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0049	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0050	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0051	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0052	9804	1	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0053	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0054	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0055	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0056	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0057	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0058	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0059	9804	1	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0060	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0061	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0062	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0063	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0064	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0065	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0066	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0067	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0068	9804	1	0	0	1	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0069	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0070	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0071	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0072	9804	1	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629