JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPEG_chr2_219429843_219498629	0/0	c0073	9804	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0074	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0075	9804	1	0	0	0	0	1	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0076	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0077	9804	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0078	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0079	9804	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0080	9804	1	0	0	1	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0081	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0082	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0083	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0084	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0085	9804	1	0	1	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEG_chr2_219429843_219498629	0/0	c0086	9804	1	1	0	0	0	0	copy fasta	SPEG	chr2	219429843	219498629
SPEM1_chr17_7415324_7426632	1/1	c0001	930	325	67	64	143	12	37	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0002	930	42	9	6	21	3	3	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0003	930	13	12	1	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0004	930	10	1	9	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0005	930	2	2	0	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0006	930	1	0	0	0	1	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0007	930	1	1	0	0	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0008	930	1	0	0	1	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0009	930	1	0	0	0	0	1	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0010	930	1	0	0	0	0	1	copy fasta	SPEM1	chr17	7415324	7426632
SPEM1_chr17_7415324_7426632	0/0	c0011	930	1	0	0	1	0	0	copy fasta	SPEM1	chr17	7415324	7426632
SPEM2_chr17_7420616_7432568	1/0	c0001	1506	246	40	47	127	7	24	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/1	c0002	1506	48	11	17	2	7	10	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0003	1506	28	12	5	0	2	9	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0004	1506	19	18	1	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0005	1506	6	0	5	0	0	1	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0006	1506	2	2	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0007	1506	2	0	0	0	0	2	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0008	1506	2	0	2	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0009	1506	2	2	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0010	1506	2	0	1	1	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0011	1506	1	0	1	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0012	1506	1	0	0	1	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0013	1506	1	0	0	1	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0014	1506	1	1	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0015	1506	1	0	1	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0016	1506	1	1	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM2_chr17_7420616_7432568	0/0	c0017	1506	1	1	0	0	0	0	copy fasta	SPEM2	chr17	7420616	7432568
SPEM3_chr17_7423857_7437820	1/1	c0001	3591	217	32	57	86	11	29	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0002	3591	49	16	8	21	2	2	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0003	3591	16	2	6	1	2	5	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0004	3591	10	9	1	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0005	3591	9	0	0	9	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0006	3591	7	7	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0007	3591	6	5	1	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0008	3591	6	6	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820