JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPEM3_chr17_7423857_7437820	0/0	c0009	3591	4	1	2	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0010	3591	4	0	0	4	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0011	3591	4	0	0	4	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0012	3591	3	3	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0013	3591	2	0	2	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0014	3591	2	2	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0015	3591	2	2	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0016	3591	2	2	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0017	3591	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0018	3591	1	0	0	0	1	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0019	3591	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0020	3591	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0021	3591	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0022	3591	1	0	0	1	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0023	3591	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0024	3591	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0025	3591	1	0	1	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0026	3591	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEM3_chr17_7423857_7437820	0/0	c0027	3591	1	1	0	0	0	0	copy fasta	SPEM3	chr17	7423857	7437820
SPEN_chr1_15842707_15945456	0/1	c0001	10995	89	35	22	5	9	17	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	1/0	c0002	10995	72	2	13	45	1	10	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0003	10995	65	3	12	46	0	4	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0004	10995	12	6	2	3	0	1	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0005	10995	8	6	2	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0006	10995	7	4	3	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0007	10995	4	4	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0008	10995	3	2	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0009	10995	3	3	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0010	10995	3	0	0	3	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0011	10992	3	0	2	0	1	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0012	10995	3	3	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0013	10995	2	2	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0014	10995	2	0	1	0	1	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0015	10995	2	0	0	2	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0016	10995	2	0	0	0	0	2	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0017	10995	2	2	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0018	10995	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0019	10995	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0020	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0021	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0022	10995	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0023	10995	1	0	0	0	1	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0024	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0025	10995	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0026	10995	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0027	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0028	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0029	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0030	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0031	10995	1	0	0	0	1	0	copy fasta	SPEN	chr1	15842707	15945456