JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPEN_chr1_15842707_15945456	0/0	c0032	10995	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0033	10995	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0034	10995	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0035	10995	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0036	10995	1	0	0	1	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0037	10995	1	1	0	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0038	10995	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPEN_chr1_15842707_15945456	0/0	c0039	10995	1	0	1	0	0	0	copy fasta	SPEN	chr1	15842707	15945456
SPESP1_chr15_68925525_68951811	1/0	c0001	1053	179	31	29	86	6	26	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/1	c0002	1053	144	50	22	52	8	11	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0003	1053	51	11	3	34	0	3	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0004	1053	12	0	0	11	0	1	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0005	1053	10	0	0	10	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0006	1053	2	0	0	2	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0007	1053	1	0	0	0	0	1	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0008	1053	1	1	0	0	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0009	1053	1	0	0	1	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPESP1_chr15_68925525_68951811	0/0	c0010	1053	1	1	0	0	0	0	copy fasta	SPESP1	chr15	68925525	68951811
SPG11_chr15_44557696_44668662	0/0	c0001	7332	72	24	8	29	1	10	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	1/1	c0002	7332	51	19	8	15	2	5	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0003	7332	16	1	0	13	0	2	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0004	7332	12	0	0	12	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0005	7332	7	6	1	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0006	7332	4	4	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0007	7332	3	3	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0008	7332	3	3	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0009	7332	2	0	1	0	1	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0010	7332	2	2	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0011	7332	2	2	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0012	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0013	7332	1	0	0	0	1	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0014	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0015	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0016	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0017	7332	1	0	1	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0018	7332	1	0	0	1	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0019	7332	1	0	0	0	0	1	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0020	7332	1	0	1	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0021	7332	1	0	0	0	1	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0022	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0023	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0024	7332	1	0	0	1	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0025	7332	1	0	0	1	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0026	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG11_chr15_44557696_44668662	0/0	c0027	7332	1	1	0	0	0	0	copy fasta	SPG11	chr15	44557696	44668662
SPG21_chr15_64958022_64994914	1/1	c0001	927	350	94	58	150	16	30	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	c0002	927	1	0	0	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG21_chr15_64958022_64994914	0/0	c0003	927	1	0	0	1	0	0	copy fasta	SPG21	chr15	64958022	64994914
SPG7_chr16_89503403_89562766	1/0	c0001	2388	292	73	67	109	10	32	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/1	c0002	2388	33	1	4	15	3	9	copy fasta	SPG7	chr16	89503403	89562766