JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPG7_chr16_89503403_89562766	0/0	c0003	2388	8	8	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0004	2388	4	1	0	2	1	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0005	2388	4	4	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0006	2388	2	0	1	0	1	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0007	2388	2	2	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0008	2388	2	1	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0009	2388	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0010	2388	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0011	2388	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0012	2388	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0013	2388	1	1	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0014	2388	1	0	0	0	1	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0015	2388	1	0	0	0	0	1	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0016	2388	1	0	1	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0017	2388	1	0	1	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0018	2388	1	0	0	1	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPG7_chr16_89503403_89562766	0/0	c0019	2388	1	1	0	0	0	0	copy fasta	SPG7	chr16	89503403	89562766
SPHK1_chr17_76379609_76392855	1/1	c0001	1155	277	74	45	110	14	32	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0002	1155	81	8	10	54	2	7	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0003	1155	36	6	8	16	0	6	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0004	1155	3	3	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0005	1155	2	2	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0006	1155	2	0	0	2	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0007	1155	2	0	2	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0008	1155	2	2	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0009	1155	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0010	1155	1	0	0	0	0	1	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0011	1155	1	1	0	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0012	1155	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0013	1155	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0014	1155	1	0	0	1	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK1_chr17_76379609_76392855	0/0	c0015	1155	1	0	1	0	0	0	copy fasta	SPHK1	chr17	76379609	76392855
SPHK2_chr19_48614506_48635405	1/0	c0001	1965	323	73	60	151	9	29	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/1	c0002	1965	33	3	10	13	1	5	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0003	1965	14	13	1	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0004	1965	10	0	7	2	0	1	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0005	1965	7	0	2	0	2	3	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0006	1965	2	2	0	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0007	1965	2	2	0	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0008	1965	2	0	0	2	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0009	1965	2	0	0	0	2	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0010	1965	1	0	0	1	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0011	1965	1	1	0	0	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHK2_chr19_48614506_48635405	0/0	c0012	1965	1	0	0	1	0	0	copy fasta	SPHK2	chr19	48614506	48635405
SPHKAP_chr2_227974955_228186687	0/1	c0001	5103	71	19	9	36	2	4	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0002	5103	60	1	11	36	1	11	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	1/0	c0003	5103	49	10	11	17	3	7	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0004	5103	48	4	17	20	3	4	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0005	5103	37	31	3	0	0	3	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0006	5103	14	14	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687