JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPHKAP_chr2_227974955_228186687	0/0	c0007	5103	6	0	4	2	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0008	5103	3	3	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0009	5103	3	0	0	3	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0010	5103	3	0	0	3	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0011	5103	3	0	2	0	1	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0012	5103	2	0	2	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0013	5103	2	2	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0014	5103	2	2	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0015	5103	2	0	2	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0016	5103	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0017	5103	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0018	5103	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0019	5103	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0020	5103	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0021	5103	1	0	1	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0022	5103	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0023	5103	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0024	5103	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0025	5103	1	0	1	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0026	5103	1	0	1	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0027	5103	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0028	5103	1	0	0	0	0	1	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0029	5103	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0030	5103	1	0	0	1	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0031	5103	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPHKAP_chr2_227974955_228186687	0/0	c0032	5103	1	1	0	0	0	0	copy fasta	SPHKAP	chr2	227974955	228186687
SPI1_chr11_47349860_47383547	1/1	c0001	813	386	90	74	162	14	44	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	c0002	813	2	0	0	2	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	c0003	813	1	0	0	1	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPI1_chr11_47349860_47383547	0/0	c0004	813	1	0	0	1	0	0	copy fasta	SPI1	chr11	47349860	47383547
SPIB_chr19_50413938_50436314	0/1	c0001	789	153	24	54	30	13	31	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0002	789	118	56	11	45	1	5	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	1/0	c0003	789	104	12	14	65	1	11	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0004	789	6	0	2	0	3	1	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0005	789	2	2	0	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0006	789	1	0	0	0	0	1	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0007	789	1	0	0	0	0	1	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0008	789	1	0	0	1	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0009	789	1	0	1	0	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPIB_chr19_50413938_50436314	0/0	c0010	789	1	0	0	1	0	0	copy fasta	SPIB	chr19	50413938	50436314
SPICE1_chr3_113437718_113520156	1/0	c0001	2568	216	41	38	101	7	28	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0002	2568	71	24	11	28	4	4	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0003	2568	24	2	0	17	1	4	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0004	2568	13	12	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0005	2568	11	0	0	11	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0006	2568	4	0	4	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0007	2568	3	0	1	0	0	2	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0008	2568	3	0	0	3	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0009	2568	3	2	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0010	2568	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156