JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPICE1_chr3_113437718_113520156	0/0	c0011	2568	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0012	2568	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0013	2568	2	2	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/1	c0014	2568	1	0	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0015	2568	1	0	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0016	2568	1	0	0	1	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0017	2568	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0018	2568	1	0	1	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0019	2568	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0020	2568	1	1	0	0	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPICE1_chr3_113437718_113520156	0/0	c0021	2568	1	0	0	1	0	0	copy fasta	SPICE1	chr3	113437718	113520156
SPIC_chr12_101470336_101491997	1/1	c0001	747	360	76	66	162	18	36	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	c0002	747	17	3	3	10	0	1	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	c0003	747	14	14	0	0	0	0	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	c0004	747	5	3	2	0	0	0	copy fasta	SPIC	chr12	101470336	101491997
SPIC_chr12_101470336_101491997	0/0	c0005	747	2	0	1	0	0	1	copy fasta	SPIC	chr12	101470336	101491997
SPIDR_chr8_47255938_47741306	1/1	c0001	2748	180	42	37	63	4	32	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0002	2748	18	18	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0003	2748	5	4	1	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0004	2748	4	4	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0005	2748	2	0	0	0	0	2	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0006	2748	2	0	0	0	0	2	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0007	2748	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0008	2748	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0009	2748	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0010	2748	1	0	0	1	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIDR_chr8_47255938_47741306	0/0	c0011	2748	1	1	0	0	0	0	copy fasta	SPIDR	chr8	47255938	47741306
SPIN1_chr9_88383444_88483694	1/1	c0001	789	159	67	24	38	10	18	copy fasta	SPIN1	chr9	88383444	88483694
SPIN1_chr9_88383444_88483694	0/0	c0002	789	17	15	2	0	0	0	copy fasta	SPIN1	chr9	88383444	88483694
SPIN2A_chrX_57130650_57142397	0/1	c0001	777	254	30	46	147	9	21	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	c0002	777	52	43	7	0	0	2	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	1/0	c0003	777	14	1	9	1	0	2	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	c0004	777	3	0	0	0	0	3	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	c0005	777	2	2	0	0	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	c0006	777	1	1	0	0	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	c0007	777	1	0	0	1	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2A_chrX_57130650_57142397	0/0	c0008	777	1	1	0	0	0	0	copy fasta	SPIN2A	chrX	57130650	57142397
SPIN2B_chrX_57114682_57126548	1/1	c0001	777	319	76	61	144	11	25	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	c0002	777	2	1	0	0	0	1	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN2B_chrX_57114682_57126548	0/0	c0003	777	1	1	0	0	0	0	copy fasta	SPIN2B	chrX	57114682	57126548
SPIN3_chrX_56985831_57000541	1/1	c0001	777	314	72	56	150	11	23	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	c0002	777	2	2	0	0	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	c0003	779	1	0	0	1	0	0	copy fasta	SPIN3	chrX	56985831	57000541
SPIN3_chrX_56985831_57000541	0/0	c0004	777	1	0	0	0	0	1	copy fasta	SPIN3	chrX	56985831	57000541
SPIN4_chrX_63342228_63356332	1/1	c0001	750	295	77	58	119	11	28	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	c0002	750	2	0	2	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPIN4_chrX_63342228_63356332	0/0	c0003	750	1	1	0	0	0	0	copy fasta	SPIN4	chrX	63342228	63356332
SPINDOC_chr11_63808456_63832716	1/1	c0001	1146	208	77	34	59	11	25	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0002	1146	161	6	49	88	5	13	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0003	1146	6	2	0	0	0	4	copy fasta	SPINDOC	chr11	63808456	63832716