JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPINDOC_chr11_63808456_63832716	0/0	c0004	1146	5	5	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0005	1146	2	0	0	2	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0006	1146	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0007	1146	1	0	1	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0008	1146	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0009	1146	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0010	1146	1	0	0	0	0	1	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0011	1146	1	0	0	0	0	1	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0012	1146	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0013	1146	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0014	1146	1	0	0	1	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINDOC_chr11_63808456_63832716	0/0	c0015	1146	1	1	0	0	0	0	copy fasta	SPINDOC	chr11	63808456	63832716
SPINK13_chr5_148263794_148291255	1/1	c0001	285	375	94	60	175	12	32	copy fasta	SPINK13	chr5	148263794	148291255
SPINK13_chr5_148263794_148291255	0/0	c0002	285	1	0	0	1	0	0	copy fasta	SPINK13	chr5	148263794	148291255
SPINK14_chr5_148163546_148180619	1/0	c0001	294	103	10	14	72	0	6	copy fasta	SPINK14	chr5	148163546	148180619
SPINK14_chr5_148163546_148180619	0/0	c0002	294	6	4	2	0	0	0	copy fasta	SPINK14	chr5	148163546	148180619
SPINK1_chr5_147819582_147836671	1/1	c0001	240	393	71	76	187	18	39	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	c0002	240	11	9	2	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	c0003	240	11	11	0	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	c0004	240	8	0	0	5	0	3	copy fasta	SPINK1	chr5	147819582	147836671
SPINK1_chr5_147819582_147836671	0/0	c0005	240	3	3	0	0	0	0	copy fasta	SPINK1	chr5	147819582	147836671
SPINK2_chr4_56804861_56826701	1/1	c0001	405	341	41	69	171	13	45	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	c0002	405	84	49	11	22	1	1	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	c0003	405	2	2	0	0	0	0	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	c0004	405	1	0	0	1	0	0	copy fasta	SPINK2	chr4	56804861	56826701
SPINK4_chr9_33235167_33253567	1/1	c0001	261	218	22	49	114	7	24	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	c0002	261	158	64	25	60	1	8	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	c0003	261	1	0	0	1	0	0	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	c0004	261	1	0	0	1	0	0	copy fasta	SPINK4	chr9	33235167	33253567
SPINK5_chr5_148058980_148142382	0/0	c0001	3195	129	13	17	76	7	16	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0002	3195	57	3	4	42	1	7	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	1/1	c0003	3195	49	6	10	21	6	4	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0004	3195	39	0	1	38	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0005	3195	16	15	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0006	3195	12	11	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0007	3195	9	0	2	3	0	4	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0008	3195	9	9	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0009	3195	7	6	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0010	3195	5	5	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0011	3195	4	0	2	0	1	1	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0012	3195	3	3	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0013	3195	3	0	0	3	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0014	3192	3	3	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0015	3195	3	2	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0016	3195	2	0	2	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0017	3195	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0018	3195	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0019	3195	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0020	3195	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0021	3195	2	0	2	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382