JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPINK5_chr5_148058980_148142382	0/0	c0022	3195	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0023	3195	2	1	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0024	3195	2	0	0	2	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0025	3195	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0026	3195	1	0	0	0	0	1	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0027	3195	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0028	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0029	3195	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0030	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0031	3195	1	0	0	0	1	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0032	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0033	3195	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0034	3195	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0035	3195	1	0	0	0	0	1	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0036	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0037	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0038	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0039	3195	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0040	3195	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0041	3195	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	c0042	3195	1	0	0	1	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK6_chr5_148198042_148220137	0/1	c0001	243	279	26	65	143	11	33	copy fasta	SPINK6	chr5	148198042	148220137
SPINK6_chr5_148198042_148220137	1/0	c0002	243	158	74	9	68	1	5	copy fasta	SPINK6	chr5	148198042	148220137
SPINK6_chr5_148198042_148220137	0/0	c0003	243	1	0	0	1	0	0	copy fasta	SPINK6	chr5	148198042	148220137
SPINK7_chr5_148307423_148320919	1/1	c0001	258	408	93	71	180	14	48	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	c0002	258	37	0	1	36	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	c0003	258	3	3	0	0	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK8_chr3_48301842_48338661	1/0	c0001	294	202	61	38	78	6	18	copy fasta	SPINK8	chr3	48301842	48338661
SPINK8_chr3_48301842_48338661	0/1	c0002	294	60	5	16	30	2	6	copy fasta	SPINK8	chr3	48301842	48338661
SPINK9_chr5_148330559_148344852	1/1	c0001	261	430	92	72	212	10	42	copy fasta	SPINK9	chr5	148330559	148344852
SPINT1_chr15_40839048_40863207	0/1	c0001	1542	163	13	38	79	8	24	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0002	1542	37	0	4	27	0	6	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0003	1542	34	18	6	1	5	4	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0004	1542	32	27	2	1	1	1	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0005	1542	23	2	1	20	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0006	1542	20	3	0	17	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0007	1542	8	8	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0008	1542	7	6	1	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0009	1542	6	0	4	0	2	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0010	1542	5	1	3	0	0	1	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0011	1542	4	4	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0012	1542	3	3	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0013	1545	3	0	0	1	0	2	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0014	1542	3	3	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0015	1542	2	2	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0016	1542	2	2	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0017	1542	1	0	1	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0018	1542	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0019	1542	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	1/0	c0020	1542	1	0	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207