JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPINT1_chr15_40839048_40863207	0/0	c0021	1542	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	c0022	1542	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT2_chr19_38259573_38297615	1/1	c0001	759	392	83	70	184	15	38	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	c0002	759	4	0	2	0	1	1	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	c0003	759	2	2	0	0	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	c0004	759	1	1	0	0	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	c0005	759	1	0	0	0	0	1	copy fasta	SPINT2	chr19	38259573	38297615
SPINT3_chr20_45507461_45520622	1/0	c0001	270	231	32	42	129	9	18	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/1	c0002	270	199	48	41	77	9	23	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	c0003	270	18	11	2	1	0	4	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	c0004	270	2	2	0	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	c0005	270	1	0	1	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	c0006	270	1	0	0	0	0	1	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	c0007	270	1	1	0	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	c0008	270	1	0	0	1	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT4_chr20_45717347_45730830	1/1	c0001	300	227	28	50	115	10	22	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	c0002	300	217	63	19	110	4	21	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	c0003	300	8	1	5	0	0	2	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	c0004	300	4	4	0	0	0	0	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	c0005	300	1	0	0	1	0	0	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	c0006	300	1	0	0	0	0	1	copy fasta	SPINT4	chr20	45717347	45730830
SPIRE1_chr18_12441512_12663107	1/1	c0001	2271	310	78	67	117	10	36	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0002	2271	5	5	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0003	2271	5	3	2	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0004	2271	3	0	0	3	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0005	2271	1	0	0	1	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0006	2271	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0007	2271	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0008	2271	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	c0009	2271	1	0	0	1	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE2_chr16_89823475_89876319	1/0	c0001	2145	256	84	57	72	14	28	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0002	2240	23	0	0	20	1	2	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/1	c0003	2145	16	0	4	7	1	3	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0004	2145	12	0	0	11	0	1	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0005	2145	12	0	5	1	0	6	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0006	2145	6	0	0	4	0	2	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0007	2148	4	0	1	3	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0008	2145	4	2	2	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0009	2145	3	0	0	0	0	3	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0010	2145	2	2	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0011	2145	2	2	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0012	2145	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0013	2240	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0014	2148	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0015	2194	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0016	2145	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0017	2145	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0018	2145	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0019	2145	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0020	2145	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319