JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPIRE2_chr16_89823475_89876319	0/0	c0021	2145	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0022	2145	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0023	2237	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0024	2237	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0025	2240	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0026	2145	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	c0027	2145	1	0	0	0	0	1	copy fasta	SPIRE2	chr16	89823475	89876319
SPNS1_chr16_28969778_28989543	1/1	c0001	1587	290	54	52	146	11	25	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0002	1587	71	17	1	35	0	18	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0003	1587	18	2	13	0	1	2	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0004	1587	5	5	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0005	1587	2	2	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0006	1587	2	0	0	0	2	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0007	1587	2	0	2	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0008	1587	2	2	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0009	1587	1	0	1	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0010	1587	1	0	1	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0011	1587	1	1	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0012	1587	1	1	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0013	1587	1	0	0	0	0	1	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	c0014	1587	1	0	0	1	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS2_chr17_4493881_4544035	1/1	c0001	1650	361	71	87	142	13	46	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0002	1650	9	9	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0003	1650	8	8	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0004	1650	7	0	0	7	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0005	1650	5	0	0	5	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0006	1650	2	1	1	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0007	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0008	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0009	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0010	1650	1	0	0	0	1	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0011	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0012	1650	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0013	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0014	1650	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0015	1650	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0016	1650	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0017	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	c0018	1650	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS3_chr17_4428940_4493204	1/0	c0001	1539	127	29	8	82	1	6	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0002	1539	43	1	25	9	0	8	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0003	1539	29	14	5	7	2	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0004	1539	18	2	0	16	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0005	1539	16	1	2	6	1	6	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0006	1539	13	11	0	0	0	2	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0007	1539	13	5	5	1	1	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0008	1539	11	0	6	0	3	2	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0009	1539	11	6	1	3	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0010	1539	9	1	4	0	1	3	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0011	1539	8	0	2	1	2	3	copy fasta	SPNS3	chr17	4428940	4493204