JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPNS3_chr17_4428940_4493204	0/0	c0012	1539	5	5	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0013	1539	4	1	0	3	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0014	1539	4	1	2	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0015	1539	3	0	2	0	1	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0016	1539	2	0	0	0	0	2	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0017	1539	2	2	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0018	1539	2	2	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0019	1539	2	0	0	0	0	2	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0020	1539	2	0	1	1	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0021	1539	2	0	0	1	1	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0022	1539	2	0	1	1	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0023	1539	2	1	1	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0024	1539	2	0	1	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0025	1539	2	2	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0026	1539	2	0	0	2	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0027	1539	1	0	0	1	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0028	1539	1	0	0	0	1	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0029	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0030	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0031	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0032	1539	1	0	0	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0033	1539	1	0	0	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0034	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0035	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0036	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0037	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0038	1539	1	0	0	1	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/1	c0039	1539	1	0	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0040	1539	1	0	0	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0041	1539	1	0	0	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0042	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0043	1539	1	0	0	0	0	1	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0044	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0045	1539	1	0	1	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0046	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0047	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0048	1539	1	0	1	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0049	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0050	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0051	1539	1	0	0	1	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	c0052	1539	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPN_chr16_29658247_29675876	1/1	c0001	1203	288	67	67	109	11	32	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0002	1203	73	2	14	47	0	10	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0003	1203	8	7	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0004	1203	7	0	0	7	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0005	1203	3	3	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0006	1203	3	3	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0007	1203	2	2	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0008	1203	2	0	0	0	2	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0009	1203	2	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876