JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPN_chr16_29658247_29675876	0/0	c0010	1203	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0011	1203	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0012	1203	1	0	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0013	1203	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0014	1203	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	c0015	1140	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPO11_chr20_57324803_57348993	1/1	c0001	1191	293	72	52	119	11	37	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	c0002	1191	16	11	3	0	1	1	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	c0003	1191	7	7	0	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	c0004	1191	2	2	0	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	c0005	1191	2	0	0	2	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	c0006	1191	1	0	0	1	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	c0007	1191	1	0	1	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPOCD1_chr1_31785422_31821022	0/0	c0001	3651	81	29	9	27	1	15	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0002	3651	72	11	19	31	3	8	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	1/1	c0003	3651	67	17	11	30	2	5	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0004	3651	4	0	1	2	1	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0005	3651	4	0	0	4	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0006	3651	4	3	1	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0007	3651	3	0	1	0	1	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0008	3651	3	3	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0009	3651	3	3	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0010	3651	2	0	0	0	0	2	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0011	3617	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0012	3651	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0013	3651	1	0	1	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0014	3651	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0015	3651	1	1	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0016	3651	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0017	3651	1	1	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0018	3651	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0019	3651	1	0	0	0	1	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0020	3651	1	0	1	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0021	3651	1	0	0	0	1	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0022	3651	1	1	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0023	3651	1	1	0	0	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0024	3651	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0025	3651	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0026	3651	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	c0027	3651	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCK1_chr5_136970298_137504326	0/0	c0001	1320	132	42	11	60	8	11	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	c0002	1320	15	14	1	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	c0003	1320	3	0	0	0	0	3	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	c0004	1320	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	c0005	1320	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK2_chr10_72054034_72093551	1/1	c0001	1275	301	68	59	125	10	37	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0002	1275	47	13	8	19	2	5	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0003	1275	5	0	0	5	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0004	1275	3	3	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0005	1275	2	1	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551