JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPOCK2_chr10_72054034_72093551	0/0	c0006	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0007	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0008	1275	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0009	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0010	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0011	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0012	1275	1	0	0	0	0	1	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0013	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0014	1275	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0015	1275	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0016	1275	1	0	0	0	0	1	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0017	1275	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0018	1275	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	c0019	1275	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK3_chr4_166728384_167239494	1/1	c0001	1302	108	34	25	36	5	6	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0002	1302	10	1	6	0	0	3	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0003	1302	7	5	0	0	0	2	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0004	1302	6	6	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0005	1302	5	4	0	0	1	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0006	1302	2	2	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0007	1302	2	1	0	0	0	1	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0008	1302	2	2	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0009	1302	1	1	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	c0010	1302	1	0	1	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPON1_chr11_13957723_14273133	1/1	c0001	2424	96	24	17	41	4	8	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0002	2424	66	31	13	13	1	8	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0003	2424	29	9	4	9	1	6	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0004	2424	25	8	4	5	2	6	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0005	2424	2	0	0	2	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0006	2424	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0007	2424	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0008	2424	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0009	2424	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0010	2424	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	c0011	2424	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON2_chr4_1161932_1177583	0/1	c0001	996	232	15	55	125	10	26	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0002	996	59	12	8	33	1	5	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0003	996	53	14	4	31	1	3	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0004	996	34	19	10	0	0	5	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	1/0	c0005	996	16	14	1	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0006	997	10	0	2	7	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0007	996	4	0	0	1	0	3	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0008	996	4	4	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0009	997	3	0	1	2	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0010	996	3	3	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0011	996	3	3	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0012	997	1	0	1	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0013	996	1	0	0	0	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0014	996	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0015	997	1	0	0	1	0	0	copy fasta	SPON2	chr4	1161932	1177583