JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPON2_chr4_1161932_1177583	0/0	c0016	997	1	0	0	0	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0017	997	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0018	996	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0019	996	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0020	996	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0021	996	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	c0022	997	1	0	0	0	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPOPL_chr2_138496770_138578547	1/1	c0001	1179	367	84	54	182	12	33	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	c0002	1179	2	1	0	0	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	c0003	1179	1	0	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	c0004	1179	1	0	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	c0005	1179	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOP_chr17_49593884_49683097	1/1	c0001	1125	388	94	79	162	10	41	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	c0002	1125	1	0	0	0	0	1	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	c0003	1125	1	0	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOUT1_chr9_128814651_128834794	0/1	c0001	1131	203	15	52	104	11	20	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0002	1131	123	44	19	41	1	18	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0003	1131	55	11	3	35	0	6	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	1/0	c0004	1131	9	7	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0005	1131	6	0	0	6	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0006	1131	5	5	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0007	1131	4	3	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0008	1131	2	2	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0009	1131	1	0	0	0	1	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0010	1131	1	0	0	0	1	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	c0011	1131	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPP1_chr4_87970714_87988411	1/1	c0001	945	200	46	51	64	11	26	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0002	945	193	14	27	131	7	14	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0003	945	13	12	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0004	945	8	7	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0005	945	8	8	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0006	945	3	1	0	0	0	2	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0007	945	2	0	2	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0008	945	2	2	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0009	945	1	0	0	1	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0010	945	1	0	0	1	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0011	945	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0012	945	1	0	0	1	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0013	945	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0014	945	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	c0015	945	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP2_chr2_234045702_234082134	0/1	c0001	636	252	57	43	108	12	31	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	1/0	c0002	636	152	35	26	80	4	6	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	c0003	636	22	0	0	22	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	c0004	636	3	1	1	0	0	1	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	c0005	636	2	0	2	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	c0006	636	1	0	0	1	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	c0007	636	1	1	0	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	c0008	636	1	0	0	1	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPPL2A_chr15_50697266_50770706	1/1	c0001	1563	317	83	60	131	10	31	copy fasta	SPPL2A	chr15	50697266	50770706