JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATXN7L1_chr7_105599772_105881599	0/0	c0010	2586	1	1	0	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	c0011	2586	1	0	1	0	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	c0012	2586	1	0	0	1	0	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L1_chr7_105599772_105881599	0/0	c0013	2586	1	0	0	0	1	0	copy fasta	ATXN7L1	chr7	105599772	105881599
ATXN7L2_chr1_109478905_109497734	1/1	c0001	2265	308	85	58	113	12	38	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0002	2265	14	10	2	0	2	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0003	2254	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0004	2265	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0005	2265	1	0	0	0	0	1	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0006	2265	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0007	2265	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0008	2265	1	0	0	1	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0009	2265	1	1	0	0	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0010	2265	1	1	0	0	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0011	2265	1	0	0	0	0	1	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L2_chr1_109478905_109497734	0/0	c0012	2265	1	1	0	0	0	0	copy fasta	ATXN7L2	chr1	109478905	109497734
ATXN7L3B_chr12_74532835_74550430	0/1	c0001	294	293	20	54	171	9	38	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	1/0	c0002	294	113	74	18	13	1	6	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	c0003	294	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3B_chr12_74532835_74550430	0/0	c0004	294	1	1	0	0	0	0	copy fasta	ATXN7L3B	chr12	74532835	74550430
ATXN7L3_chr17_44186805_44204884	1/1	c0001	1044	368	84	66	165	13	38	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	c0002	1044	5	5	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	c0003	1044	4	4	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	c0004	1044	1	0	0	0	1	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	c0005	1044	1	1	0	0	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7L3_chr17_44186805_44204884	0/0	c0006	1044	1	0	0	1	0	0	copy fasta	ATXN7L3	chr17	44186805	44204884
ATXN7_chr3_63858867_64008462	1/1	c0001	2679	107	23	21	45	5	11	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0002	2679	37	23	3	10	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0003	2679	37	0	2	30	2	3	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0004	2685	25	1	5	13	1	5	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0005	2685	16	0	5	11	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0006	2682	15	13	2	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0007	2679	6	0	1	5	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0008	2670	6	2	0	4	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0009	2682	5	5	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0010	2682	4	0	0	4	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0011	2676	4	4	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0012	2682	3	2	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0013	2682	3	3	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0014	2688	3	3	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0015	2679	3	0	0	3	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0016	2688	2	0	2	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0017	2679	2	1	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0018	2682	2	1	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0019	2694	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0020	2694	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0021	2691	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0022	2691	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0023	2688	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0024	2685	1	0	1	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462