JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPPL2A_chr15_50697266_50770706	0/0	c0002	1563	8	1	3	4	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	c0003	1563	4	4	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	c0004	1563	4	0	0	4	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	c0005	1563	2	0	0	1	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	c0006	1563	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2B_chr19_2323684_2360095	0/0	c0001	1779	148	26	39	53	10	20	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0002	1779	65	0	8	52	0	5	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0003	1779	49	3	12	29	1	4	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/1	c0004	1779	37	15	3	12	3	3	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0005	1779	28	27	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0006	1779	14	1	4	0	1	8	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0007	1779	8	3	3	0	0	2	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0008	1779	6	6	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	1/0	c0009	1779	6	0	3	1	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0010	1779	5	2	0	0	0	3	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0011	1779	5	3	1	0	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0012	1779	4	0	0	4	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0013	1779	3	0	0	3	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0014	1779	3	3	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0015	1779	3	1	0	2	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0016	1779	3	3	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0017	1779	3	0	0	3	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0018	1779	2	1	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0019	1779	2	0	0	2	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0020	1779	2	0	2	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0021	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0022	1779	1	0	0	0	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0023	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0024	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0025	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0026	1779	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0027	1779	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0028	1779	1	0	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0029	1779	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0030	1779	1	0	0	0	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0031	1779	1	0	0	0	1	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0032	1779	1	0	0	0	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0033	1779	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0034	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0035	1779	1	0	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0036	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0037	1779	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	c0038	1779	1	0	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2C_chr17_45839881_45852067	0/0	c0001	2055	216	32	41	112	7	24	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0002	2055	33	24	7	0	1	1	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0003	2055	32	2	5	20	1	4	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/1	c0004	2055	32	15	6	9	0	1	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0005	2055	20	1	8	1	4	6	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0006	2055	8	8	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	c0007	2055	7	0	7	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067