JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPRR2D_chr1_153034732_153046120	0/0	c0004	219	2	0	0	2	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2E_chr1_153088135_153099526	1/1	c0001	219	345	80	75	131	16	41	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	c0002	219	111	12	11	79	0	9	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2F_chr1_153107121_153118516	1/1	c0001	219	315	70	64	135	11	33	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0002	219	94	0	10	76	0	8	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0003	219	16	15	1	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0004	219	5	5	0	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0005	219	2	0	1	0	1	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0006	219	2	2	0	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0007	219	1	0	0	0	0	1	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	c0008	219	1	0	0	1	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2G_chr1_153144582_153155890	1/1	c0001	222	409	83	64	202	12	46	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	c0002	222	11	11	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	c0003	222	2	0	0	2	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	c0004	222	2	2	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR3_chr1_152996749_153008856	0/1	c0001	486	222	48	35	109	5	24	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	1/0	c0002	510	155	20	39	68	10	17	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0003	486	18	18	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0004	486	9	0	0	9	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0005	510	6	0	0	4	0	2	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0006	486	5	5	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0007	510	2	0	2	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0008	486	1	1	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0009	486	1	0	0	0	1	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	c0010	486	1	0	0	0	0	1	copy fasta	SPRR3	chr1	152996749	153008856
SPRR4_chr1_152965648_152977574	0/1	c0001	240	253	62	38	121	10	21	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	1/0	c0002	240	162	15	42	75	6	23	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	0/0	c0003	240	23	17	0	6	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	0/0	c0004	240	2	0	2	0	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR5_chr1_152942206_152954255	1/0	c0001	327	309	67	56	147	6	32	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/1	c0002	306	84	11	20	30	8	14	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0003	328	12	2	2	6	0	2	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0004	306	8	8	0	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0005	327	5	0	0	5	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0006	348	5	0	0	5	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0007	327	5	5	0	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0008	327	2	1	0	0	0	1	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0009	307	2	0	1	1	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0010	327	1	0	0	1	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0011	307	1	0	1	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0012	307	1	0	0	0	0	1	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	c0013	349	1	0	0	1	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRTN_chr1_231333293_231360023	1/1	c0001	1470	176	46	23	75	6	24	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0002	1470	154	34	29	71	6	14	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0003	1470	6	0	0	6	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0004	1470	5	5	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0005	1470	2	0	0	2	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0006	1470	2	0	0	1	0	1	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0007	1470	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0008	1470	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023