JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPRTN_chr1_231333293_231360023	0/0	c0009	1470	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0010	1470	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0011	1470	1	0	0	0	0	1	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0012	1470	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	c0013	1470	1	1	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRY1_chr4_123391795_123408755	1/1	c0001	960	403	90	63	198	14	36	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	c0002	960	2	2	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	c0003	960	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	c0004	960	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	c0005	947	1	0	0	1	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	c0006	960	1	0	1	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	c0007	960	1	0	0	1	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY2_chr13_80330976_80346126	1/0	c0001	948	286	92	40	117	10	26	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/1	c0002	948	133	3	32	73	8	16	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	c0003	948	1	0	0	1	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	c0004	948	1	1	0	0	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	c0005	937	1	0	0	1	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY3_chrX_155607586_155787459	1/0	c0001	867	204	58	36	86	4	19	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/1	c0002	867	23	11	2	2	3	4	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	c0003	867	2	0	0	0	0	2	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	c0004	867	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	c0005	867	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY4_chr5_142305430_142330021	1/1	c0001	900	369	90	71	153	14	39	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0002	900	2	2	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0003	900	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0004	900	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0005	900	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0006	900	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0007	900	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0008	900	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	c0009	900	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRYD3_chr12_53059316_53084390	1/1	c0001	1329	402	96	64	185	10	45	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	c0002	1329	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	c0003	1329	1	0	0	0	0	1	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD4_chr12_56463578_56484708	1/1	c0001	624	360	82	66	160	16	34	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	c0002	624	5	4	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	c0003	624	5	4	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD7_chr13_49907702_49941340	1/1	c0001	591	379	92	66	155	16	48	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	c0002	591	1	0	0	1	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPR_chr2_72882408_72897158	1/1	c0001	786	325	86	68	114	18	37	copy fasta	SPR	chr2	72882408	72897158
SPR_chr2_72882408_72897158	0/0	c0002	786	1	1	0	0	0	0	copy fasta	SPR	chr2	72882408	72897158
SPR_chr2_72882408_72897158	0/0	c0003	786	1	1	0	0	0	0	copy fasta	SPR	chr2	72882408	72897158
SPR_chr2_72882408_72897158	0/0	c0004	786	1	0	0	0	0	1	copy fasta	SPR	chr2	72882408	72897158
SPSB1_chr1_9287894_9374532	1/1	c0001	822	195	72	34	63	5	19	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	c0002	822	93	12	20	42	2	17	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	c0003	822	77	8	16	40	3	10	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	c0004	822	2	0	0	2	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	c0005	822	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	c0006	822	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	c0007	822	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532