JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPSB2_chr12_6865935_6878303	1/1	c0001	792	378	84	66	172	16	38	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0002	792	7	0	3	4	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0003	792	4	4	0	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0004	792	3	3	0	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0005	792	2	0	0	2	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0006	792	1	0	0	0	0	1	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0007	792	1	0	1	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0008	792	1	0	0	0	0	1	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	c0009	792	1	1	0	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB3_chr16_1771712_1787571	0/1	c0001	1068	338	83	66	139	15	34	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	1/0	c0002	1068	77	3	8	52	0	13	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0003	1068	6	5	1	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0004	1068	2	0	0	2	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0005	1068	2	2	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0006	1068	2	2	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0007	1068	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0008	1068	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0009	1068	1	0	0	0	0	1	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0010	1068	1	1	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0011	1068	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0012	1068	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0013	1068	1	0	0	1	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0014	1068	1	0	1	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0015	1068	1	0	0	0	1	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0016	1068	1	1	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	c0017	1068	1	1	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB4_chr3_141046347_141153611	0/1	c0001	822	130	56	22	40	2	9	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	1/0	c0002	822	115	33	24	44	2	11	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	c0003	822	6	0	0	6	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	c0004	822	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	c0005	822	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPTA1_chr1_158605704_158691715	0/1	c0001	7260	89	2	21	48	4	13	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0002	7260	62	1	16	39	2	4	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0003	7260	38	1	8	19	3	7	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0004	7260	23	1	1	17	1	3	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0005	7260	12	0	2	10	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0006	7260	10	4	0	6	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0007	7260	5	5	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0008	7260	5	0	2	2	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0009	7260	4	0	3	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0010	7260	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0011	7260	3	0	1	2	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0012	7260	3	0	1	2	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0013	7260	3	0	2	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0014	7260	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0015	7260	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0016	7260	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0017	7260	3	0	0	3	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	1/0	c0018	7260	2	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0019	7260	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715