JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTA1_chr1_158605704_158691715	0/0	c0070	7260	1	0	0	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0071	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0072	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0073	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0074	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0075	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0076	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0077	7260	1	0	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0078	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0079	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0080	7260	1	0	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0081	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0082	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0083	7260	1	0	0	0	0	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0084	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0085	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0086	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0087	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0088	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0089	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0090	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0091	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0092	7260	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0093	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0094	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0095	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0096	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0097	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0098	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0099	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0100	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0101	7260	1	0	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	c0102	7260	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTAN1_chr9_128547587_128638662	0/1	c0001	7434	119	25	17	52	10	14	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0002	7434	104	19	11	61	2	11	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0003	7434	13	0	0	13	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0004	7434	11	0	0	9	0	2	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	1/0	c0005	7434	9	8	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0006	7434	8	6	2	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0007	7434	7	7	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0008	7434	6	4	2	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0009	7434	3	3	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0010	7434	3	3	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0011	7434	3	0	0	3	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0012	7434	3	0	3	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0013	7434	3	0	0	3	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0014	7434	2	2	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0015	7434	2	0	2	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0016	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0017	7434	1	0	1	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662