JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTAN1_chr9_128547587_128638662	0/0	c0018	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0019	7434	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0020	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0021	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0022	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0023	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0024	7434	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0025	7434	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0026	7434	1	0	0	0	0	1	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0027	7434	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0028	7434	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0029	7434	1	0	1	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0030	7434	1	0	1	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	c0031	7434	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTBN1_chr2_54451327_54676446	1/1	c0001	7095	109	12	13	68	3	11	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0002	7095	71	2	21	36	4	8	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0003	7095	38	17	5	11	1	4	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0004	7095	38	7	11	12	3	5	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0005	7095	29	28	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0006	7095	11	0	0	8	0	3	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0007	7095	10	4	2	4	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0008	7095	9	9	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0009	7095	9	0	7	0	0	2	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0010	7095	5	0	3	2	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0011	7095	5	0	1	0	2	2	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0012	7095	4	4	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0013	7095	4	3	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0014	7095	3	0	0	3	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0015	7095	2	0	0	2	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0016	7095	2	0	0	0	0	2	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0017	7095	2	0	0	0	0	2	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0018	7095	2	2	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0019	7095	2	2	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0020	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0021	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0022	7095	1	0	0	0	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0023	7095	1	0	0	0	1	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0024	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0025	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0026	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0027	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0028	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0029	7095	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0030	7095	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0031	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0032	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0033	7095	1	0	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	c0034	7095	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN2_chr11_66677497_66734216	0/1	c0001	7173	189	38	30	85	10	25	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0002	7173	50	12	4	33	0	1	copy fasta	SPTBN2	chr11	66677497	66734216