JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTBN2_chr11_66677497_66734216	0/0	c0003	7173	27	0	1	21	1	4	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0004	7173	5	5	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0005	7173	5	5	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0006	7173	5	0	4	0	0	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0007	7173	4	4	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	1/0	c0008	7173	3	2	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0009	7173	3	0	0	3	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0010	7173	2	0	2	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0011	7173	2	0	2	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0012	7173	2	0	0	2	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0013	7173	2	0	0	2	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0014	7173	2	1	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0015	7173	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0016	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0017	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0018	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0019	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0020	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0021	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0022	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0023	7173	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0024	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0025	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0026	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0027	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0028	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0029	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0030	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0031	7173	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0032	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0033	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0034	7173	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0035	7173	1	0	0	0	0	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0036	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0037	7173	1	0	0	0	1	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0038	7173	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0039	7173	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0040	7173	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	c0041	7173	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN4_chr19_40462001_40581464	1/1	c0001	7695	66	2	17	33	3	9	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0002	7695	19	9	1	6	1	2	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0003	7695	17	6	2	3	3	3	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0004	7695	11	4	2	2	0	3	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0005	7695	11	0	8	0	0	3	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0006	7695	11	6	1	4	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0007	7695	10	2	4	0	1	3	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0008	7695	10	6	1	2	1	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0009	7695	8	6	0	0	0	2	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0010	7695	8	5	1	0	1	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0011	7695	4	4	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464