JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ATXN7_chr3_63858867_64008462	0/0	c0025	2685	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0026	2685	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0027	2682	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0028	2682	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0029	2682	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0030	2679	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0031	2679	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0032	2679	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0033	2679	1	0	0	0	0	1	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0034	2679	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0035	2676	1	1	0	0	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0036	2670	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0037	2670	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
ATXN7_chr3_63858867_64008462	0/0	c0038	2670	1	0	0	1	0	0	copy fasta	ATXN7	chr3	63858867	64008462
AUH_chr9_91208823_91366918	1/1	c0001	1020	317	61	52	163	6	33	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0002	1020	31	15	6	7	0	3	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0003	1020	3	3	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0004	1020	2	0	1	0	0	1	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0005	1020	1	1	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0006	1020	1	1	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0007	1020	1	0	0	0	0	1	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0008	1020	1	1	0	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUH_chr9_91208823_91366918	0/0	c0009	1020	1	0	1	0	0	0	copy fasta	AUH	chr9	91208823	91366918
AUNIP_chr1_25829006_25864457	1/1	c0001	1074	334	92	51	150	10	29	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0002	1074	6	5	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0003	1074	2	0	0	2	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0004	1074	2	0	0	2	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0005	1074	2	2	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0006	1074	1	0	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0007	1074	1	1	0	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0008	1064	1	0	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0009	1074	1	0	0	1	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0010	1074	1	0	0	0	0	1	copy fasta	AUNIP	chr1	25829006	25864457
AUNIP_chr1_25829006_25864457	0/0	c0011	1074	1	0	1	0	0	0	copy fasta	AUNIP	chr1	25829006	25864457
AUP1_chr2_74521652_74534706	1/1	c0001	1233	371	89	63	180	7	30	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	c0002	1233	6	1	2	0	3	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	c0003	1233	5	5	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	c0004	1233	3	0	3	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	c0005	1233	1	1	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	c0006	1233	1	1	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AUP1_chr2_74521652_74534706	0/0	c0007	1233	1	1	0	0	0	0	copy fasta	AUP1	chr2	74521652	74534706
AURKAIP1_chr1_1368736_1380207	1/1	c0001	600	322	67	68	124	12	49	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0002	600	17	12	2	3	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0003	600	9	9	0	0	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0004	600	4	0	0	4	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0005	600	3	0	0	0	2	1	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0006	600	1	1	0	0	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0007	600	1	1	0	0	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKAIP1_chr1_1368736_1380207	0/0	c0008	600	1	0	0	1	0	0	copy fasta	AURKAIP1	chr1	1368736	1380207
AURKA_chr20_56364390_56397215	0/1	c0001	1212	202	66	43	53	9	30	copy fasta	AURKA	chr20	56364390	56397215