JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTBN4_chr19_40462001_40581464	0/0	c0012	7695	4	0	1	3	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0013	7695	3	3	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0014	7695	3	3	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0015	7695	3	3	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0016	7695	2	2	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0017	7695	2	0	0	2	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0018	7695	2	0	0	0	0	2	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0019	7695	2	0	2	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0020	7695	2	1	0	0	1	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0021	7695	2	1	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0022	7695	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0023	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0024	7695	1	0	0	0	1	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0025	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0026	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0027	7695	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0028	7695	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0029	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0030	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0031	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0032	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0033	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0034	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0035	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0036	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0037	7695	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0038	7695	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0039	7695	1	0	0	0	1	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0040	7695	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0041	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0042	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0043	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0044	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0045	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0046	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0047	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0048	7695	1	0	0	0	1	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0049	7695	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0050	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0051	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0052	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0053	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0054	7695	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	c0055	7695	1	0	1	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN5_chr15_41843146_41899053	0/0	c0001	11025	50	0	21	20	5	4	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0002	11025	42	0	5	37	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0003	11025	21	20	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0004	11025	17	2	5	0	4	6	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0005	11025	11	0	4	7	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0006	11025	9	9	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053