JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTBN5_chr15_41843146_41899053	0/0	c0057	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0058	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0059	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0060	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0061	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0062	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0063	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0064	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0065	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0066	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0067	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0068	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0069	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0070	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0071	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0072	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0073	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0074	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0075	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0076	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0077	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0078	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0079	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0080	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0081	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0082	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0083	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0084	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0085	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0086	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0087	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0088	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0089	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0090	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0091	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0092	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0093	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0094	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0095	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0096	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0097	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/1	c0098	11025	1	0	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0099	11025	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0100	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0101	11025	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0102	11025	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0103	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0104	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0105	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0106	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053