JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTBN5_chr15_41843146_41899053	0/0	c0107	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0108	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0109	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0110	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0111	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0112	11025	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0113	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0114	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0115	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0116	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0117	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0118	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0119	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0120	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0121	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0122	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0123	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0124	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0125	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0126	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0127	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0128	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0129	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0130	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0131	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0132	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0133	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0134	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0135	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0136	11025	1	0	0	0	1	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0137	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0138	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0139	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0140	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0141	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0142	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0143	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0144	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0145	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0146	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0147	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0148	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0149	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0150	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0151	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0152	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0153	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0154	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0155	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0156	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053