JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTBN5_chr15_41843146_41899053	0/0	c0157	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0158	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0159	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0160	11025	1	0	0	0	0	1	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0161	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0162	11025	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0163	11025	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	c0164	11025	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTB_chr14_64741283_64884907	1/1	c0001	6987	37	4	12	7	2	10	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0002	6987	34	7	3	22	2	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0003	6987	20	13	5	2	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0004	6987	13	0	9	3	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0005	6987	12	11	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0006	6987	11	5	0	1	1	4	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0007	6987	9	0	1	5	1	2	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0008	6987	9	0	0	9	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0009	6987	7	1	0	6	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0010	6987	6	0	0	4	0	2	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0011	6987	4	4	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0012	6987	4	3	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0013	6987	4	0	0	0	0	4	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0014	6987	4	2	0	2	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0015	6987	4	0	1	2	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0016	6987	4	4	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0017	6987	3	2	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0018	6987	3	0	3	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0019	6987	3	3	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0020	6987	3	3	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0021	6987	3	2	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0022	6987	3	0	1	1	1	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0023	6987	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0024	6987	2	0	0	0	0	2	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0025	6987	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0026	6987	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0027	6987	2	0	0	2	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0028	6987	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0029	6987	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0030	6987	2	0	0	0	0	2	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0031	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0032	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0033	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0034	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0035	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0036	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0037	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0038	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0039	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0040	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0041	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0042	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907