JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTB_chr14_64741283_64884907	0/0	c0043	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0044	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0045	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0046	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0047	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0048	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0049	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0050	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0051	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0052	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0053	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0054	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0055	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0056	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0057	6987	1	0	0	0	1	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0058	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0059	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0060	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0061	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0062	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0063	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0064	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0065	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0066	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0067	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0068	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0069	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0070	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0071	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0072	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0073	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0074	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0075	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0076	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0077	6987	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0078	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0079	6987	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0080	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0081	6987	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	c0082	6987	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTLC1_chr9_92026147_92120413	1/1	c0001	1422	352	81	60	167	12	30	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	c0002	1422	1	0	1	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	c0003	1422	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	c0004	1422	1	0	1	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	c0005	1422	1	0	0	0	0	1	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	c0006	1422	1	0	0	0	0	1	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	c0007	1422	1	0	0	1	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC2_chr14_77500997_77621637	0/1	c0001	1689	178	32	49	54	16	26	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	1/0	c0002	1689	47	34	10	0	0	2	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0003	1689	6	6	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637