JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPTLC2_chr14_77500997_77621637	0/0	c0004	1689	4	4	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0005	1689	3	3	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0006	1689	3	3	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0007	1689	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0008	1689	1	0	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0009	1689	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0010	1689	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	c0011	1689	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC3_chr20_13003972_13174103	0/0	c0001	1659	138	45	22	55	8	8	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/1	c0002	1659	47	3	6	31	2	4	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0003	1659	34	12	6	11	1	4	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0004	1659	21	2	6	9	1	3	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0005	1659	19	12	3	0	2	2	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0006	1659	13	0	1	12	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0007	1659	5	2	2	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0008	1659	3	0	3	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0009	1659	3	1	0	2	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0010	1659	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0011	1659	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0012	1659	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	1/0	c0013	1659	1	0	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0014	1659	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0015	1659	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0016	1659	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0017	1659	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	c0018	1659	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTSSA_chr14_34427788_34467240	1/1	c0001	216	338	84	62	142	8	40	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	c0002	216	4	4	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	c0003	216	2	2	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSB_chr3_161339798_161376517	1/1	c0001	231	412	94	74	182	14	46	copy fasta	SPTSSB	chr3	161339798	161376517
SPTY2D1_chr11_18601403_18639342	1/0	c0001	2058	235	73	41	94	8	18	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/1	c0002	2058	110	5	25	59	5	15	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0003	2058	63	0	6	50	1	6	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0004	2058	9	5	3	0	0	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0005	2058	8	8	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0006	2058	6	0	1	0	3	2	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0007	2055	3	0	1	0	1	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0008	2058	2	0	0	2	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0009	2058	2	2	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0010	2058	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0011	2058	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0012	2058	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0013	2058	1	0	0	0	0	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0014	2058	1	0	1	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	c0015	2058	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPX_chr12_21521296_21537947	1/1	c0001	351	427	93	76	198	16	42	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	c0002	351	1	1	0	0	0	0	copy fasta	SPX	chr12	21521296	21537947
SPZ1_chr5_80315002_80326842	0/1	c0001	1293	325	62	42	183	9	28	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	1/0	c0002	1293	65	12	30	14	4	4	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0003	1293	18	7	5	0	1	5	copy fasta	SPZ1	chr5	80315002	80326842