JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SPZ1_chr5_80315002_80326842	0/0	c0004	1293	6	0	3	0	1	2	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0005	1293	3	1	1	0	1	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0006	1293	3	0	0	3	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0007	1293	3	3	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0008	1293	2	2	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0009	1293	2	2	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0010	1293	1	0	1	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0011	1293	1	0	0	1	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0012	1293	1	0	0	1	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0013	1293	1	1	0	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0014	1293	1	0	0	0	0	1	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0015	1293	1	0	1	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	c0016	1293	1	0	1	0	0	0	copy fasta	SPZ1	chr5	80315002	80326842
SQLE_chr8_124993505_125027283	1/1	c0001	1725	315	73	61	140	12	27	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0002	1725	27	1	0	18	1	7	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0003	1725	19	18	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0004	1725	2	0	1	0	1	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0005	1725	2	0	2	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0006	1725	2	0	0	2	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0007	1725	2	0	0	2	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0008	1725	1	1	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0009	1725	1	0	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0010	1725	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0011	1725	1	1	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0012	1725	1	0	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0013	1725	1	0	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0014	1725	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0015	1725	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	c0016	1725	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQOR_chr15_45630029_45696281	1/1	c0001	1353	213	59	38	86	5	23	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0002	1353	85	5	11	57	2	10	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0003	1353	16	3	5	1	3	4	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0004	1353	5	0	5	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0005	1353	4	0	0	4	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0006	1353	3	2	1	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0007	1353	3	3	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0008	1353	3	3	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0009	1353	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0010	1353	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0011	1353	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0012	1353	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0013	1353	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0014	1353	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0015	1353	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	c0016	1353	1	0	0	0	0	1	copy fasta	SQOR	chr15	45630029	45696281
SQSTM1_chr5_179815905_179843078	0/1	c0001	1323	279	24	56	154	8	36	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	1/0	c0002	1323	85	16	22	25	10	11	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0003	1323	41	21	2	16	0	2	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0004	1323	8	8	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0005	1323	7	6	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078