JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SQSTM1_chr5_179815905_179843078	0/0	c0006	1323	6	6	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0007	1323	6	6	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0008	1323	5	2	0	2	0	1	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0009	1323	4	4	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0010	1323	3	0	0	3	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0011	1323	3	0	0	3	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0012	1323	2	0	2	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0013	1323	2	1	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0014	1323	2	0	2	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0015	1323	1	0	0	1	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0016	1323	1	0	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0017	1323	1	0	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0018	1323	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0019	1323	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0020	1323	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0021	1323	1	0	0	1	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0022	1323	1	0	0	1	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	c0023	1323	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SRA1_chr5_140545068_140562473	0/0	c0001	678	156	18	33	86	5	14	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	1/0	c0002	675	140	63	19	37	6	14	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/1	c0003	675	95	9	16	54	7	8	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0004	675	4	0	0	4	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0005	678	2	2	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0006	689	1	0	0	1	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0007	678	1	0	1	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0008	675	1	0	1	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0009	675	1	1	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	c0010	675	1	1	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRARP_chr1_15999236_16013807	1/1	c0001	510	282	66	58	113	13	30	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0002	510	63	3	11	46	1	2	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0003	510	26	5	2	7	3	9	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0004	510	7	7	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0005	532	6	6	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0006	510	5	5	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0007	510	2	0	0	2	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0008	510	2	0	1	0	1	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0009	510	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0010	510	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0011	464	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0012	510	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0013	510	1	0	0	0	0	1	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0014	510	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	c0015	510	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRBD1_chr2_45383680_45616267	1/1	c0001	2988	195	51	41	69	10	22	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0002	2988	62	22	11	22	1	6	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0003	2988	60	2	9	39	2	8	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0004	2988	18	8	1	6	1	2	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0005	2988	5	0	0	5	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0006	2988	2	2	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0007	2988	2	2	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267