JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRBD1_chr2_45383680_45616267	0/0	c0008	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0009	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0010	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0011	2988	1	0	0	0	0	1	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0012	2988	1	0	0	0	0	1	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0013	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0014	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0015	2988	1	0	1	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0016	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0017	2988	1	0	0	1	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0018	2988	1	0	1	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0019	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0020	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	c0021	2988	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRCAP_chr16_30694171_30746409	0/1	c0001	9693	157	38	46	46	12	14	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	1/0	c0002	9693	7	5	1	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0003	9693	7	6	1	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0004	9693	4	0	4	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0005	9693	4	4	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0006	9693	3	3	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0007	9693	3	3	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0008	9693	3	1	0	0	2	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0009	9693	2	0	0	1	0	1	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0010	9693	2	0	0	2	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0011	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0012	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0013	9693	1	0	1	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0014	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0015	9693	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0016	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0017	9693	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0018	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0019	9693	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0020	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0021	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0022	9693	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0023	9693	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0024	9693	1	0	0	0	0	1	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0025	9693	1	0	1	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	c0026	9693	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCIN1_chr17_38525031_38610952	0/1	c0001	3552	145	28	31	66	1	18	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0002	3552	40	5	10	17	0	8	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0003	3552	19	8	3	3	1	4	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0004	3552	12	12	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0005	3552	9	9	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0006	3552	5	5	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0007	3552	4	4	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0008	3552	3	3	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0009	3552	3	3	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0010	3552	3	2	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952