JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
AURKA_chr20_56364390_56397215	0/0	c0002	1212	111	9	14	77	3	8	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	1/0	c0003	1212	67	22	5	28	4	7	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	c0004	1212	2	2	0	0	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	c0005	1212	1	0	0	0	0	1	copy fasta	AURKA	chr20	56364390	56397215
AURKA_chr20_56364390_56397215	0/0	c0006	1212	1	1	0	0	0	0	copy fasta	AURKA	chr20	56364390	56397215
AURKB_chr17_8199734_8215575	0/1	c0001	1035	270	55	55	109	15	35	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	1/0	c0002	1035	122	30	16	72	0	3	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	c0003	1035	30	6	11	5	3	5	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	c0004	1035	2	2	0	0	0	0	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	c0005	1035	2	0	0	0	0	2	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	c0006	1035	1	1	0	0	0	0	copy fasta	AURKB	chr17	8199734	8215575
AURKB_chr17_8199734_8215575	0/0	c0007	1035	1	0	0	0	0	1	copy fasta	AURKB	chr17	8199734	8215575
AURKC_chr19_57226023_57240548	1/1	c0001	930	392	84	74	174	16	42	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0002	930	4	4	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0003	930	4	4	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0004	930	4	4	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0005	930	3	3	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0006	930	1	0	0	1	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0007	930	1	1	0	0	0	0	copy fasta	AURKC	chr19	57226023	57240548
AURKC_chr19_57226023_57240548	0/0	c0008	930	1	0	0	1	0	0	copy fasta	AURKC	chr19	57226023	57240548
AUTS2_chr7_69593475_70798506	0/0	c0001	3780	59	28	12	8	5	6	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0002	3780	5	4	0	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0003	3780	3	3	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0004	3780	2	2	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0005	3780	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0006	3780	1	0	0	0	0	1	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0007	3780	1	0	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0008	3780	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0009	3780	1	0	0	0	1	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0010	3780	1	1	0	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AUTS2_chr7_69593475_70798506	0/0	c0011	3780	1	0	1	0	0	0	copy fasta	AUTS2	chr7	69593475	70798506
AVEN_chr15_33861227_34044204	1/0	c0001	1089	204	72	38	61	5	27	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0002	1089	31	1	0	27	0	3	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/1	c0003	1077	13	2	4	0	2	4	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0004	1101	4	4	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0005	1101	3	3	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0006	1089	3	0	0	3	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0007	1077	3	0	2	0	0	1	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0008	1101	1	1	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0009	1089	1	0	0	1	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0010	1089	1	1	0	0	0	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0011	1089	1	0	0	0	1	0	copy fasta	AVEN	chr15	33861227	34044204
AVEN_chr15_33861227_34044204	0/0	c0012	1089	1	0	0	0	0	1	copy fasta	AVEN	chr15	33861227	34044204
AVIL_chr12_57792380_57823734	0/1	c0001	2460	345	73	74	147	13	37	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0002	2460	6	6	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0003	2460	3	0	0	1	0	2	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0004	2460	2	0	0	2	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0005	2460	2	2	0	0	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0006	2460	1	0	0	1	0	0	copy fasta	AVIL	chr12	57792380	57823734
AVIL_chr12_57792380_57823734	0/0	c0007	2460	1	0	0	0	0	1	copy fasta	AVIL	chr12	57792380	57823734