JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRCIN1_chr17_38525031_38610952	0/0	c0011	3552	2	2	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0012	3552	2	0	1	0	1	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0013	3552	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0014	3552	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0015	3552	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0016	3552	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0017	3552	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0018	3552	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0019	3552	1	0	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0020	3552	1	0	0	0	1	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0021	3552	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0022	3552	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0023	3552	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0024	3552	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0025	3552	1	0	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	c0026	3552	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRC_chr20_37341140_37411050	0/1	c0001	1611	273	88	50	96	10	28	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	c0002	1611	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	c0003	1611	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	c0004	1611	2	2	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	c0005	1611	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	1/0	c0006	1611	1	0	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRC_chr20_37341140_37411050	0/0	c0007	1611	1	1	0	0	0	0	copy fasta	SRC	chr20	37341140	37411050
SRD5A1_chr5_6628440_6679386	1/0	c0001	780	172	20	22	109	7	13	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0002	780	130	42	18	46	4	20	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/1	c0003	780	83	16	25	29	3	9	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0004	780	9	9	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0005	780	5	4	1	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0006	780	4	0	4	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0007	780	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0008	780	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A1_chr5_6628440_6679386	0/0	c0009	780	1	1	0	0	0	0	copy fasta	SRD5A1	chr5	6628440	6679386
SRD5A2_chr2_31517480_31585938	0/1	c0001	765	259	75	52	103	8	20	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	1/0	c0002	765	113	17	19	61	4	11	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	c0003	765	5	0	0	5	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	c0004	765	3	0	3	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	c0005	765	3	3	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	c0006	765	1	0	0	1	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	c0007	765	1	1	0	0	0	0	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A2_chr2_31517480_31585938	0/0	c0008	702	1	0	0	0	0	1	copy fasta	SRD5A2	chr2	31517480	31585938
SRD5A3_chr4_55341242_55378100	1/1	c0001	957	375	89	71	153	16	44	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	c0002	957	5	4	1	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	c0003	957	2	2	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	c0004	957	1	0	0	1	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SRD5A3_chr4_55341242_55378100	0/0	c0005	957	1	1	0	0	0	0	copy fasta	SRD5A3	chr4	55341242	55378100
SREBF1_chr17_17806334_17841986	1/1	c0001	3444	303	68	71	116	16	30	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0002	3444	8	8	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0003	3444	5	5	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0004	3444	5	3	2	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0005	3444	4	4	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986