JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SREBF1_chr17_17806334_17841986	0/0	c0006	3444	3	0	0	2	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0007	3444	2	0	0	2	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0008	3444	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0009	3444	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0010	3444	2	0	2	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0011	3444	2	2	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0012	3444	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0013	3444	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0014	3444	1	0	0	0	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0015	3444	1	0	0	0	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0016	3444	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0017	3444	1	0	0	0	0	1	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0018	3444	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0019	3444	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0020	3444	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0021	3444	1	1	0	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0022	3444	1	0	1	0	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0023	3444	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0024	3444	1	0	0	0	1	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF1_chr17_17806334_17841986	0/0	c0025	3444	1	0	0	1	0	0	copy fasta	SREBF1	chr17	17806334	17841986
SREBF2_chr22_41828105_41912305	1/0	c0001	3426	146	17	25	78	9	16	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0002	3426	120	39	26	40	1	14	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/1	c0003	3426	15	0	4	6	1	3	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0004	3426	10	10	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0005	3426	9	9	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0006	3426	6	0	1	4	1	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0007	3426	5	4	1	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0008	3450	3	3	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0009	3426	2	2	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0010	3426	2	1	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0011	3426	2	0	1	0	0	1	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0012	3426	2	0	1	0	1	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0013	3426	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0014	3426	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0015	3426	1	0	0	0	0	1	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0016	3426	1	0	0	0	0	1	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0017	3426	1	1	0	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0018	3426	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0019	3426	1	0	0	0	0	1	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0020	3426	1	0	0	0	1	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0021	3426	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0022	3426	1	0	1	0	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0023	3426	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0024	3426	1	0	0	0	0	1	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0025	3426	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREBF2_chr22_41828105_41912305	0/0	c0026	3426	1	0	0	1	0	0	copy fasta	SREBF2	chr22	41828105	41912305
SREK1IP1_chr5_64713148_64773691	0/0	c0001	468	167	36	27	82	5	17	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	1/1	c0002	468	115	4	26	65	5	13	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	c0003	468	55	46	4	4	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	c0004	468	2	0	1	0	1	0	copy fasta	SREK1IP1	chr5	64713148	64773691