JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SREK1IP1_chr5_64713148_64773691	0/0	c0005	468	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	c0006	468	1	0	0	1	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1IP1_chr5_64713148_64773691	0/0	c0007	468	1	1	0	0	0	0	copy fasta	SREK1IP1	chr5	64713148	64773691
SREK1_chr5_66139300_66188615	1/1	c0001	1875	378	90	68	168	10	40	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	c0002	1875	3	0	0	3	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	c0003	1875	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	c0004	1875	1	0	0	1	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	c0005	1875	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	c0006	1875	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SREK1_chr5_66139300_66188615	0/0	c0007	1875	1	1	0	0	0	0	copy fasta	SREK1	chr5	66139300	66188615
SRFBP1_chr5_121956975_122033633	1/1	c0001	1290	130	41	22	47	4	14	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0002	1290	33	9	12	6	1	5	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0003	1290	18	0	2	15	0	1	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0004	1290	14	14	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0005	1290	7	4	2	0	1	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0006	1290	4	4	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0007	1290	4	4	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0008	1290	3	3	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0009	1290	3	3	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0010	1290	2	0	0	2	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0011	1290	2	1	1	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0012	1290	1	0	0	0	0	1	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0013	1290	1	0	1	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0014	1290	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0015	1290	1	0	1	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0016	1290	1	0	0	0	0	1	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0017	1290	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0018	1290	1	0	1	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRFBP1_chr5_121956975_122033633	0/0	c0019	1290	1	1	0	0	0	0	copy fasta	SRFBP1	chr5	121956975	122033633
SRF_chr6_43166269_43186506	1/1	c0001	1527	344	89	54	153	12	34	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	c0002	1527	3	3	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	c0003	1527	3	3	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	c0004	1527	3	0	3	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	c0005	1527	1	0	1	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	c0006	1527	1	0	0	1	0	0	copy fasta	SRF	chr6	43166269	43186506
SRF_chr6_43166269_43186506	0/0	c0007	1527	1	1	0	0	0	0	copy fasta	SRF	chr6	43166269	43186506
SRGAP1_chr12_63839700_64167217	0/0	c0001	3258	76	30	10	22	2	12	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/1	c0002	3258	63	25	7	18	3	9	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0003	3258	9	7	2	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0004	3258	6	0	0	0	1	5	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0005	3258	5	5	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0006	3258	4	3	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0007	3258	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0008	3258	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	1/0	c0009	3258	1	0	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0010	3258	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0011	3258	1	1	0	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0012	3258	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP1_chr12_63839700_64167217	0/0	c0013	3258	1	0	1	0	0	0	copy fasta	SRGAP1	chr12	63839700	64167217
SRGAP2B_chr1_144882288_145100328	1/1	c0001	1380	44	2	15	15	4	6	copy fasta	SRGAP2B	chr1	144882288	145100328