JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRGAP2B_chr1_144882288_145100328	0/0	c0002	1380	4	0	0	4	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0003	1380	2	0	0	0	0	2	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0004	1380	1	0	0	0	0	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0005	1380	1	0	1	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0006	1380	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0007	1380	1	1	0	0	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0008	1380	1	0	0	1	0	0	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2B_chr1_144882288_145100328	0/0	c0009	1380	1	0	0	0	0	1	copy fasta	SRGAP2B	chr1	144882288	145100328
SRGAP2C_chr1_121179975_121397874	0/0	c0001	1380	148	44	29	47	9	19	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	1/1	c0002	1380	100	18	22	34	5	19	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0003	1380	14	14	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0004	1380	3	3	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0005	1380	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0006	1380	1	0	1	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0007	1380	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0008	1380	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0009	1380	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0010	1380	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0011	1380	1	1	0	0	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0012	1380	1	0	0	0	0	1	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2C_chr1_121179975_121397874	0/0	c0013	1380	1	0	0	1	0	0	copy fasta	SRGAP2C	chr1	121179975	121397874
SRGAP2_chr1_206198541_206469436	1/1	c0001	3216	50	16	9	14	2	7	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0002	3216	43	5	16	16	1	5	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0003	3216	37	25	0	10	0	2	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0004	3216	32	14	10	3	1	4	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0005	3216	5	4	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0006	3216	5	4	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0007	3216	3	3	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0008	3216	2	0	2	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0009	3216	1	0	0	1	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0010	3216	1	0	1	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0011	3216	1	0	0	0	0	1	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0012	3216	1	1	0	0	0	0	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP2_chr1_206198541_206469436	0/0	c0013	3216	1	0	0	0	0	1	copy fasta	SRGAP2	chr1	206198541	206469436
SRGAP3_chr3_8975591_9254646	1/1	c0001	3300	185	49	32	74	12	16	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0002	3300	6	3	3	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0003	3300	6	6	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0004	3300	5	3	2	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0005	3300	3	1	0	2	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0006	3300	3	0	2	0	0	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0007	3300	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0008	3300	2	0	0	2	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0009	3300	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0010	3300	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0011	3300	2	2	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0012	3300	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0013	3300	1	0	0	0	0	1	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0014	3300	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0015	3300	1	0	1	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0016	3300	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646