JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRGAP3_chr3_8975591_9254646	0/0	c0017	3300	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0018	3300	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0019	3300	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0020	3300	1	0	0	1	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGAP3_chr3_8975591_9254646	0/0	c0021	3300	1	1	0	0	0	0	copy fasta	SRGAP3	chr3	8975591	9254646
SRGN_chr10_69083103_69109805	0/1	c0001	477	218	26	43	101	15	32	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	1/0	c0002	477	159	43	18	83	2	12	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0003	477	17	14	2	1	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0004	477	11	8	2	1	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0005	477	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0006	477	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0007	477	1	1	0	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0008	477	1	0	0	0	1	0	copy fasta	SRGN	chr10	69083103	69109805
SRGN_chr10_69083103_69109805	0/0	c0009	477	1	0	1	0	0	0	copy fasta	SRGN	chr10	69083103	69109805
SRI_chr7_88200115_88225038	1/1	c0001	597	394	86	72	177	15	42	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	c0002	597	4	0	0	4	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	c0003	597	2	1	0	0	1	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	c0004	597	1	0	0	1	0	0	copy fasta	SRI	chr7	88200115	88225038
SRI_chr7_88200115_88225038	0/0	c0005	597	1	1	0	0	0	0	copy fasta	SRI	chr7	88200115	88225038
SRL_chr16_4184374_4247080	0/1	c0001	1422	281	81	58	100	10	31	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	1/0	c0002	1422	56	2	16	28	6	3	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0003	1422	5	5	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0004	1422	4	0	0	4	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0005	1422	3	3	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0006	1422	2	2	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0007	1422	2	2	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0008	1422	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0009	1422	1	0	0	0	0	1	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0010	1422	1	0	0	0	0	1	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0011	1422	1	1	0	0	0	0	copy fasta	SRL	chr16	4184374	4247080
SRL_chr16_4184374_4247080	0/0	c0012	1422	1	0	0	1	0	0	copy fasta	SRL	chr16	4184374	4247080
SRMS_chr20_63533489_63552749	0/0	c0001	1467	172	2	38	110	7	15	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	1/1	c0002	1467	56	0	27	1	11	15	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0003	1467	29	27	1	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0004	1467	27	24	3	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0005	1467	14	0	0	0	0	14	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0006	1467	9	0	0	9	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0007	1467	9	9	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0008	1467	7	5	1	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0009	1467	5	2	0	0	0	3	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0010	1467	4	4	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0011	1467	3	3	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0012	1467	2	0	0	2	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0013	1467	2	1	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0014	1467	2	2	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0015	1467	2	2	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0016	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0017	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0018	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0019	1467	1	0	0	0	0	1	copy fasta	SRMS	chr20	63533489	63552749