JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRMS_chr20_63533489_63552749	0/0	c0020	1467	1	0	1	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0021	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0022	1467	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0023	1467	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0024	1467	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0025	1467	1	0	0	1	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0026	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0027	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRMS_chr20_63533489_63552749	0/0	c0028	1467	1	1	0	0	0	0	copy fasta	SRMS	chr20	63533489	63552749
SRM_chr1_11049589_11065018	0/1	c0001	909	259	64	53	99	6	36	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	c0002	909	65	28	7	20	2	8	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	c0003	909	18	0	6	10	0	2	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	c0004	909	2	2	0	0	0	0	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	1/0	c0005	909	1	0	0	0	0	0	copy fasta	SRM	chr1	11049589	11065018
SRM_chr1_11049589_11065018	0/0	c0006	909	1	0	0	1	0	0	copy fasta	SRM	chr1	11049589	11065018
SRP14_chr15_40030690_40044181	0/0	c0001	411	160	48	15	88	0	9	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/1	c0002	411	155	23	38	61	13	19	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	1/0	c0003	411	59	5	3	45	1	4	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0004	411	24	8	5	4	2	5	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0005	411	11	8	2	1	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0006	411	9	1	1	7	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0007	411	3	3	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0008	399	1	1	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0009	411	1	0	0	1	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0010	390	1	0	0	0	0	1	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0011	411	1	0	0	1	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP14_chr15_40030690_40044181	0/0	c0012	423	1	1	0	0	0	0	copy fasta	SRP14	chr15	40030690	40044181
SRP19_chr5_112856287_112874788	1/1	c0001	435	368	86	68	158	12	42	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	c0002	435	38	9	2	25	0	2	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	c0003	435	1	1	0	0	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP19_chr5_112856287_112874788	0/0	c0004	435	1	0	0	1	0	0	copy fasta	SRP19	chr5	112856287	112874788
SRP54_chr14_34977992_35034567	1/1	c0001	1515	391	81	80	171	14	43	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	c0002	1515	3	0	0	0	0	3	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	c0003	1515	1	1	0	0	0	0	copy fasta	SRP54	chr14	34977992	35034567
SRP54_chr14_34977992_35034567	0/0	c0004	1515	1	0	0	1	0	0	copy fasta	SRP54	chr14	34977992	35034567
SRP68_chr17_76033785_76077517	0/0	c0001	1884	179	48	38	76	4	13	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	1/0	c0002	1884	136	12	23	74	9	17	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0003	1884	25	21	4	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0004	1884	4	3	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0005	1896	3	3	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0006	1884	2	0	0	0	0	2	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0007	1866	2	1	0	0	1	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0008	1884	2	2	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0009	1884	2	1	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0010	1872	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0011	1902	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0012	1884	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0013	1884	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0014	1902	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0015	1884	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517