JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
SRP68_chr17_76033785_76077517	0/0	c0016	1884	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0017	1884	1	0	1	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0018	1884	1	1	0	0	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP68_chr17_76033785_76077517	0/0	c0019	1863	1	0	0	1	0	0	copy fasta	SRP68	chr17	76033785	76077517
SRP72_chr4_56462617_56508681	1/1	c0001	2016	178	71	30	47	10	18	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0002	2016	85	8	20	48	5	4	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0003	2016	54	2	1	44	0	7	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0004	2016	43	5	4	29	3	2	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0005	2016	6	0	6	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0006	2016	5	0	0	5	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0007	2016	5	0	0	5	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0008	2016	2	2	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0009	2016	2	1	1	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0010	2016	1	0	0	1	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0011	2016	1	0	0	1	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0012	2016	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0013	2016	1	0	0	0	0	1	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0014	2016	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0015	2016	1	1	0	0	0	0	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0016	2016	1	0	0	0	0	1	copy fasta	SRP72	chr4	56462617	56508681
SRP72_chr4_56462617_56508681	0/0	c0017	2016	1	0	0	0	0	1	copy fasta	SRP72	chr4	56462617	56508681
SRP9_chr1_225772826_225795464	1/1	c0001	261	474	96	84	236	14	42	copy fasta	SRP9	chr1	225772826	225795464
SRPK1_chr6_35827966_35926098	1/1	c0001	1968	234	63	43	93	8	25	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	c0002	1968	101	23	19	42	4	13	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	c0003	1968	2	2	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	c0004	1968	2	0	0	2	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	c0005	1968	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	c0006	1968	1	1	0	0	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK1_chr6_35827966_35926098	0/0	c0007	1968	1	0	0	1	0	0	copy fasta	SRPK1	chr6	35827966	35926098
SRPK2_chr7_105111374_105393921	1/1	c0001	2100	268	86	65	85	7	23	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	c0002	2100	10	0	0	8	0	2	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	c0003	2100	1	0	0	0	1	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	c0004	2100	1	0	0	1	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	c0005	2100	1	0	0	0	0	1	copy fasta	SRPK2	chr7	105111374	105393921
SRPK2_chr7_105111374_105393921	0/0	c0006	2100	1	0	1	0	0	0	copy fasta	SRPK2	chr7	105111374	105393921
SRPK3_chrX_153776041_153790730	0/0	c0001	1704	175	28	28	92	4	23	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	1/1	c0002	1704	82	37	16	12	6	9	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0003	1704	6	0	0	6	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0004	1704	6	0	0	6	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0005	1704	5	5	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0006	1704	3	3	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0007	1704	3	0	2	0	1	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0008	1704	2	0	0	2	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0009	1704	2	0	1	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0010	1704	2	0	2	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0011	1702	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0012	1704	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0013	1704	1	1	0	0	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0014	1705	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730
SRPK3_chrX_153776041_153790730	0/0	c0015	1707	1	0	0	1	0	0	copy fasta	SRPK3	chrX	153776041	153790730